Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3497 ATGGATCAAGACAGAGGTGAGGTATTGGATCCGGTTCATGATGGGAATTtgagttatttggttgaagGGGTTGCAATTGCGCGAGCTAGCATAAGTGAAGCTGGAACTTCAGGAGAGGTGGGTAAGGATTTGGGATCTGATAAGGAGCTAAAGGAGGAAGTTAAGGGTCAGGACAAGCATGATCAAGAAAATATCAGTGATAAATTGCCTGGGGTTGATCAGGGAACTAGTTATAATTCAAACCATGTGGTTGATCAGGAAGTGATTGAAACTGTGGTTGTAATTGAGTCTGTTCAGAATGAGTATGTCAACGGAGATGATAGGAAATTGGAAGCAAAAGTTGATGAATCAGGGTTGAGCTTGGTGTCCATGAAAGCATCAAAAGGGGTGTCTGAAACTGATAAAAATTCATGTGTGATTGATATAAAGTGCAAAAAGTTTTATGAGAATTCTGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGGGCAACTGTCGGATGCAACAGCTGTTGGCACTGCTAATAGTGCTACAAGTGCAGATTTGATTCACCTTGGTTGTGCGTGTAAAGATGAGCTAGGCATTGCGCACGTTCATTGTGCTGAGGCCTGGTTCAAGCTTAAGGGGAACAGGTTATGTGAAATATGTGGTGAGGCTGCAAAAAATGTTTCAGGTGTTACTAGTAATGGATTTATGGAAGAGTGGAATGAAAGAAGATTCATGGACAACGATGGTAACTCATCCCACAGGGTTGTTGGATGCTGGCGCGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTAATAGCGTTTGTTCTGCCATGGTTTTTTCGTGTAAATATGTTCTAG 858 0.4149 MDQDRGEVLDPVHDGNLSYLVEGVAIARASISEAGTSGEVGKDLGSDKELKEEVKGQDKHDQENISDKLPGVDQGTSYNSNHVVDQEVIETVVVIESVQNEYVNGDDRKLEAKVDESGLSLVSMKASKGVSETDKNSCVIDIKCKKFYENSEGERICRICHLTSGQLSDATAVGTANSATSADLIHLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEAAKNVSGVTSNGFMEEWNERRFMDNDGNSSHRVVGCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3497 285 SMART ringv_2 156 219 IPR011016 GO:0008270
Ssu1g3497 285 MobiDBLite consensus disorder prediction 35 80 - -
Ssu1g3497 285 ProSiteProfiles Zinc finger RING-CH-type profile. 149 225 IPR011016 GO:0008270
Ssu1g3497 285 Pfam RING-variant domain 157 218 IPR011016 GO:0008270
Ssu1g3497 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 230 IPR013083 -
Ssu1g3497 285 PANTHER ZINC FINGER, RING-CH-TYPE 48 285 - -
Ssu1g3497 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 48 285 - -
Ssu1g3497 285 MobiDBLite consensus disorder prediction 42 67 - -
Ssu1g3497 285 SUPERFAMILY RING/U-box 151 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3497 Ssu-Chr1 89440962 89443366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3497 145 284 C3H Transcription Factor Family AT5G05830 41.379 1.08e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3497 - - gmx:100776373 486.493