Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3493 ATGGCGTACCACAACCCCCAAGACCTTCCACTTCACCATTTCACAGACCAACAACACCAACCTATCACTGACACCTCCTTGCTCTCCGACCCTACCTCCAAACCTGGCTCCGATCCTCACCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGAACACACTACaccgacaacaacaacaacagcgccaacaacaacaacaacaacaacaacagctcCAACACCAACGTTAACGCTGCTACCACCAACAACAACGGTACCAACTTCCTCAACCTCCACACTGCCGCTTCCGACTCCGGCGCCGCGGGCCAATGGCTCGCCCGCCCGATCCTCCACCGCAACCACAGCGAGGTCATCGACGACGTCGCCGCCGCCGGCGACTCCGTCATGGCCGGCGCCGAGTCGGCCGATTTGAAGGGCGGCGAGAAGGGCGAGGCGGCGGCAGCGGCGGACGGCCTGATGAACTGGCAGAATGCGAGGTTCAAGGCGGAGATTCTGGCGCACCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTTGACCAGTTGCCGAGGATCGACGCTCAGCTCGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGTCTTCGGACAAGGCATCGTTGCCGATGATAAGGAACTCGATCAGTTCTTgTCGCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTCCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATCGAGCAGTCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAAtgtctgatgatgaagatgaccAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAGCGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTAAAGCACGAATTGAAACAGggttataaagagaaaattgtgGACATCAGAGAAGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGaagtaaTGCAGGTGATAATAGTGCTGATCATTACATGTAA 1305 0.4943 MAYHNPQDLPLHHFTDQQHQPITDTSLLSDPTSKPGSDPHQPAPNWLNNALLRTHYTDNNNNSANNNNNNNNSSNTNVNAATTNNNGTNFLNLHTAASDSGAAGQWLARPILHRNHSEVIDDVAAAGDSVMAGAESADLKGGEKGEAAAAADGLMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSVFGQGIVADDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGPDSMGFGPLIPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNAGDNSADHYM 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3493 434 Gene3D - 346 407 - -
Ssu1g3493 434 SMART ELK_2 325 346 IPR005539 GO:0003677
Ssu1g3493 434 Pfam KNOX1 domain 163 203 IPR005540 GO:0003677|GO:0005634
Ssu1g3493 434 ProSiteProfiles ELK domain profile. 325 345 IPR005539 GO:0003677
Ssu1g3493 434 MobiDBLite consensus disorder prediction 42 86 - -
Ssu1g3493 434 ProSiteProfiles 'Homeobox' domain profile. 345 408 IPR001356 GO:0003677
Ssu1g3493 434 MobiDBLite consensus disorder prediction 23 86 - -
Ssu1g3493 434 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 424 - -
Ssu1g3493 434 SMART HOX_1 347 412 IPR001356 GO:0003677
Ssu1g3493 434 SUPERFAMILY Homeodomain-like 347 410 IPR009057 -
Ssu1g3493 434 Pfam Homeobox KN domain 365 404 IPR008422 GO:0003677|GO:0006355
Ssu1g3493 434 SMART KNOX2_2 213 268 IPR005541 GO:0003677|GO:0005634
Ssu1g3493 434 MobiDBLite consensus disorder prediction 408 434 - -
Ssu1g3493 434 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 32 424 - -
Ssu1g3493 434 SMART KNOX1_2 160 204 IPR005540 GO:0003677|GO:0005634
Ssu1g3493 434 Pfam ELK domain 325 346 IPR005539 GO:0003677
Ssu1g3493 434 CDD homeodomain 348 409 IPR001356 GO:0003677
Ssu1g3493 434 Pfam KNOX2 domain 218 267 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3493 Ssu-Chr1 89307940 89311515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3493 1 422 Homeobox Transcription Factor Family AT5G25220 67.500 0.0 554
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu1g3493 KNOX2 3.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3493 - - gmx:100790048 696.812