Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3482 ATGAGTGGTGTCGAGGATAAACAAGTGGTTTTGAAAAAGGTGAGCGGTGTTGAGGATAAGCAAGTGGTTTTGAAAACGATTGAGCAAGAAAAAAGGGTGGTCGAACCTGTGGAGGAAGAAAAACCTGTTACGAGGAGTGTGAAGTTGGTGTATGGACAGGATATAAGGCGGGCAGAGTTACCCGTGAATTGTAGTGTGAAGTTGGTGAGGGATATAGCTAGGGATCGGTTTCCAGGTTTGAAGGGTGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACAATCACCACTACTGATGAACTAAGGTTAGCTGAAAAATCTGGTCCTGAGAAGGCATCGTTTAGGCTTTATATTACTGAGGTCAACCCAGATCAAGAACCTTCTTATGATGGAACAACAACCAATGGGGATGAGGTGCAAAAGGGTGGCGGAAGACCGAGTGATGGTGCTGAGAATGGGGGTATGGAAGAAGGAAAAGGTAAAGATGTTGCAAAAAGGATGATTACTGTGGAGGACTGGCTTCTTCAGTTCGCGAGGCTGTTCAAGAACCATGTGGGGTTTGAGTCTGATTCTTATCTAGATACTCATGAGTTTGCAATGAAGCTGTATGAAGAAGCAATGGAGGATACGGTAACAGGCAATGATGCTCAAGAACTTTTTGAAATTGCTGCGGATAAATTTCAAGAGATGGCTGCTTTGGCATTGTTTAATTGGGGGAGTGTTCAAATGTCCAGGGCAAGGAACCAGGGTTTCTTTTCAGAGGATGGGGCAAGAGAATCTTCCTTGGAGCGTATAAAAGCTGCGTATGAGTTGGCGCAAAAGGAGTACAAGAAAGCAGAAATGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTATGAAGGATATCTTGCTCTTGGGCATCAGCAGTTTGAACAAGCAAGGCTCTGCTGGTGTTATGCAATGGCGTGCAAGATGGACTTAGAAGCTGGCTTTTCTGATGAGGTTCTACAACTCTATAACAAGGCAGAGGATAGCATCGAGAAAGGCATCTTGATGTGGGAGGAGATGGAGGAGCAGCGTTTGAATGGAATCTCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATAGTCTTTCCCAAGATATTTCTTACGATGAAGCTTCAAAGCAAGCTACAAAGATGAAGTCTCAGATACATCTTTTATGGGGCACCTTGTTATATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCAGTTGAAAAGTTTGAACTAGCAGGAACTTCTGCAACGGATATTGCTGTCATTGTAAAGAATCACTGCTCAAATGAAACAGCACTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTATGATGCTCGGGGATGGCAGTTTGGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATGACATCTTGGAgcaattttaa 1518 0.4282 MSGVEDKQVVLKKVSGVEDKQVVLKTIEQEKRVVEPVEEEKPVTRSVKLVYGQDIRRAELPVNCSVKLVRDIARDRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSGPEKASFRLYITEVNPDQEPSYDGTTTNGDEVQKGGGRPSDGAENGGMEEGKGKDVAKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYEEAMEDTVTGNDAQELFEIAADKFQEMAALALFNWGSVQMSRARNQGFFSEDGARESSLERIKAAYELAQKEYKKAEMRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYAMACKMDLEAGFSDEVLQLYNKAEDSIEKGILMWEEMEEQRLNGISKSDKYKEQLEKMGLDSLSQDISYDEASKQATKMKSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSATDIAVIVKNHCSNETALEGFKIDEIVQAWNEMYDARGWQFGDPSFRLEPLFRRRVPKLHDILEQF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3482 505 PANTHER PROTEIN CLMP1 16 504 IPR044517 -
Ssu1g3482 505 SUPERFAMILY TPR-like 231 396 IPR011990 GO:0005515
Ssu1g3482 505 MobiDBLite consensus disorder prediction 124 163 - -
Ssu1g3482 505 Gene3D Tetratricopeptide repeat domain 183 436 IPR011990 GO:0005515
Ssu1g3482 505 SUPERFAMILY CAD & PB1 domains 40 132 - -
Ssu1g3482 505 Pfam PB1 domain 44 120 IPR000270 GO:0005515
Ssu1g3482 505 CDD PB1 47 121 - -
Ssu1g3482 505 Gene3D - 38 123 - -
Ssu1g3482 505 PANTHER PROTEIN PHOX4 16 504 - -
Ssu1g3482 505 ProSiteProfiles PB1 domain profile. 44 123 IPR000270 GO:0005515
Ssu1g3482 505 Coils Coil 264 291 - -
Ssu1g3482 505 SMART PB1_new 44 123 IPR000270 GO:0005515
Ssu1g3482 505 MobiDBLite consensus disorder prediction 127 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3482 Ssu-Chr1 89154354 89155959 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3482 - - gmx:100805760 899.042
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0550 5 12094014 12096229 Ssu1g3482 1 89154354 89155959 PCT