Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3471 ATGTTCGCAGAAGAGAATGGCCTCAAGGGAGACCCAAGACTTCAAGCCATTTCCCAAGCCATCAGAGTCGTGCCTCACTTCCCCAAACAagGAATAATGTTCCAAGACATAACGACATTGTTGTTGGATCACAAGGCGTTTAAAGACACAGTCGACATTTTTGTCGATCGTTACAGAGACATGCACATTTCCGTTGTTGCCGGAATTGAGGCAAGGGGATTCATGTTTGGTCCCTCAATTGCGTTGGGCATTGGTGCGAAGTTTGTTCCCTTACGCAAACCACGGAAGCTGCCAGGTGAAGTAATTTCAGAAAAGTATGATCTAGAATATGGAACTGATTGTTTGGAGTTGCACGTTGGTGCTGTCCAGCCCGGTGAGCGGGCCATAGTCATTGATGACTTGGTGGCCACAGGTGGAACTCTGTCAGCTGGAGTAAAACTTCTAGGTGATTTTCAGGCTCTTTTGGGGGTGGGGTGGGGGGTTACTTTTTGTCTatgttcttttcttcttcatatCACATGTGTTTGTTCAATGTATGTGGTCCCAAGTATGCCATACATATATGGtttctttcaatttgttttgTAG 588 0.4354 MFAEENGLKGDPRLQAISQAIRVVPHFPKQGIMFQDITTLLLDHKAFKDTVDIFVDRYRDMHISVVAGIEARGFMFGPSIALGIGAKFVPLRKPRKLPGEVISEKYDLEYGTDCLELHVGAVQPGERAIVIDDLVATGGTLSAGVKLLGDFQALLGVGWGVTFCLCSFLLHITCVCSMYVVPSMPYIYGFFQFVL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3471 195 CDD PRTases_typeI 51 148 IPR000836 -
Ssu1g3471 195 Pfam Phosphoribosyl transferase domain 43 152 IPR000836 -
Ssu1g3471 195 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 5-LIKE ISOFORM X1 1 150 - -
Ssu1g3471 195 Gene3D - 6 165 IPR029057 -
Ssu1g3471 195 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 1 150 - -
Ssu1g3471 195 Hamap Adenine phosphoribosyltransferase [apt]. 17 187 IPR005764 GO:0003999|GO:0005737|GO:0006168
Ssu1g3471 195 SUPERFAMILY PRTase-like 20 153 IPR029057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3471 Ssu-Chr1 88964135 88966864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3471 1 151 PRT Gene Family AT5G11160 81.457 6.44e-88 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3471 K00759 - gmx:100499904 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3471 1 88964135 88966864 Ssu1g3471 1 88964135 88966864 ECH
Ssu1g3471 1 88964135 88966864 Ssu5g0560 5 12371345 12374822 ECH
Ssu5g0560 5 12371345 12374822 Ssu1g3471 1 88964135 88966864 PCT