Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3470 ATGGCACAAGATATGTCTACTCCACCAGCTCCTTTTGATTTTGAACTCTTGCTTGGTGATCTTGAGCACCTTAGAACTGTCACAGCCTCATCCAGCAGCACAGACCCATGGATTGAACCTGAAAGATTGAAACTCAGACACAGGATTGGTCGGGGACCCTTTGGTGATGTTTGGTTAGCAACTCATCATCAATCAACTGAAGATTATGATGAGTATCATGAAGTTGCTGCCAAGATGTTACCTCCAATCAGAGAGGAACATATGAAGACTGCATTAGAGaaattttgtgaattatatgttcAGTGCCAAGGAGTGGCTAGGGTGTGCTGGCTACTtggaatttcaattttaaatggaAGGATATGcatcattatgaatttttacGAGGGTTCAATTGGTGACAAGATTGCTAGACTCAAAGAGGGAAGAATTTCATTGCCTGATGTTCTGAGGTATGGTATCAATCTGGCTCAAGGTATTCTGGAACTTCACTCAAAAGGGATCCTAGTTCTCAACCTTAAACCATCTAATGTGCTTCTCAATGATACTGATCAAGCAATACTGGGAGATGTTGGTATTCCAAATCTTCTGTTTGGTTCCTCATTCCTAAGCTCAGATATAGCCCACAGGCTTGGTACTCCAAATTACATGGCTCCAGAACAATGGCAACCAGAACTCAGGGGCCCTATATCCTTTGAAACAGATTCATGGGGATTTGGGTGCACTATTGTGGAAATGTTGACTGGTAATCAACCTTGGTATGGGTGTCCTGTTGGTGAAATATACAGATCGGTTGTTGAAAAGTATGAAAAACCCCAGATTCCTAGTGGTCTTCCTTCTTCATTTGAAAATATCCTCAGTGGATGCTTTGAATATGATTTGAGGAATCGCCCTTCAATGGTAGATATTCTGATGGTCTTTAGAAGCTCACTGAATGCAGTAGCCAATGATGGAGGATGGAGATATCTTGGAACTCACAAAACTACAGCAAAATCAAGTAGCACTGGCTACACACAGTGGTTCCTCTCGAAGGATCATCTTCAGGTGGGTGATACAGTGCGCTCTAGAAAGCCTTCCAATTCATGCAATCCTCAAAACATGGAGGTCCCAGAAGGAAATGTTGTTGGCTTAGAACGTAATGCAGATCATGGATTTGTTTTAGTGAGGCTCCATGGTGTTCATGACCCTGTGAGGATTCATGCATCGACTCTTGAACGCGTCACCAATGGTTTGGCAGCTGGGGATTGGGTACGTTTGAAGGAAGAAGATGAGAAGCACTCGCCAGTGGGTATTCTTCATTCTATCAATCGTGATGGCAGAGTGACTGTTGGGTTTATTGGTCTGCAAACTCTTTGGAAAGGAAACTCTTCAGAACTTGAAATGGCAGAATCTTACTGTGTGGGCCAGTTTATTAGGATGAAAGCCAATGTTTTGAGTCCTCGATTTGAATGGCCACATAAAAGGGGAGGTGCCTGGGCTACTGGTAAGATTTCTTGGATCCTACCAAATGGATGTCTAGTTGCCAAATTCCCAGGCATGTTGAACTTTGGGAATGAACCAAGCACTTTCTTCGCCGATCCCTCTGAGGTTGATGTggttaattttaagaattgtcCAAGGATGATAGAAAAGTATCAACATGTGGAGGATCACCACTGGGCAGTTAGACCTTTTCTAATTGCATTTGGCCTTTTTACTGCTGTGAAACTAGGGATGTTAGTAGGAAAGAAATTTGGGAGGCACATGAATGCTAATGCAGTGGAGAATGAAAGTCATTATACAGATAGCCAGAATGCTGGCAGCCCTACATGGACATCTTCTGTGGCTAACATCCTTTTCAGAGAAGGTGTTAACTTGCCCACTGGTCGGTAG 1872 0.4188 MAQDMSTPPAPFDFELLLGDLEHLRTVTASSSSTDPWIEPERLKLRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLPPIREEHMKTALEKFCELYVQCQGVARVCWLLGISILNGRICIIMNFYEGSIGDKIARLKEGRISLPDVLRYGINLAQGILELHSKGILVLNLKPSNVLLNDTDQAILGDVGIPNLLFGSSFLSSDIAHRLGTPNYMAPEQWQPELRGPISFETDSWGFGCTIVEMLTGNQPWYGCPVGEIYRSVVEKYEKPQIPSGLPSSFENILSGCFEYDLRNRPSMVDILMVFRSSLNAVANDGGWRYLGTHKTTAKSSSTGYTQWFLSKDHLQVGDTVRSRKPSNSCNPQNMEVPEGNVVGLERNADHGFVLVRLHGVHDPVRIHASTLERVTNGLAAGDWVRLKEEDEKHSPVGILHSINRDGRVTVGFIGLQTLWKGNSSELEMAESYCVGQFIRMKANVLSPRFEWPHKRGGAWATGKISWILPNGCLVAKFPGMLNFGNEPSTFFADPSEVDVVNFKNCPRMIEKYQHVEDHHWAVRPFLIAFGLFTAVKLGMLVGKKFGRHMNANAVENESHYTDSQNAGSPTWTSSVANILFREGVNLPTGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3470 623 PANTHER OS06G0639500 PROTEIN 2 618 - -
Ssu1g3470 623 SUPERFAMILY Protein kinase-like (PK-like) 40 305 IPR011009 -
Ssu1g3470 623 CDD STKc_PknB_like 44 302 - -
Ssu1g3470 623 Gene3D Phosphorylase Kinase; domain 1 21 128 - -
Ssu1g3470 623 Pfam Protein tyrosine and serine/threonine kinase 43 304 IPR001245 GO:0004672|GO:0006468
Ssu1g3470 623 ProSiteProfiles Protein kinase domain profile. 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3470 623 PANTHER OS06G0639500 PROTEIN 2 618 - -
Ssu1g3470 623 Gene3D Transferase(Phosphotransferase) domain 1 129 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3470 Ssu-Chr1 88934429 88937162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3470 27 317 MAP Kinase Kinase Kinase AT4G35780 24.662 3.44e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Ssu1g3470 PK_Tyr_Ser-Thr 1.2e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3470 - - gmx:100780636 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3470 1 88934429 88937162 Ssu1g3470 1 88934429 88937162 ECH
Ssu1g3470 1 88934429 88937162 Ssu5g0562 5 12415811 12419641 ECH
Ssu5g0562 5 12415811 12419641 Ssu1g3470 1 88934429 88937162 PCT