Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3466 ATGGAGCTTCAGTTAGATCTTGCTCTCCCCACTCACAACCCCGTTGAGGAATTCAAGCTTAACAAGTCGAAACAGATAGTGAGTTTAGAGTTATGGGGACCCAGTTGCGGTTCTGAAAGCGAAAAGCATGTCAAACACAAGCGCAGCTTCGAAGAGTCCTTCGAACATTTTTTGAAACCTTTGCCTTTACTAGTATGGAGTGGACAGCCAAACGAGGAAGATGACCGTAGTGAAAAGACGCGAAGAAACATTCACACACCAAACATGAACGGTGATGAAGAAAACCATTTGGTGGGGTGGCCACCAGTTAAATCATGGAGGAGGAAAGAACTCCATCAGCAGCATCCTGCGAGAGGCCAAATCAGGAACGAAAGGATTCAAGCTAATGAGAATCAAAGTAGAGGATCAAACACTTTATATGTCAAGGTTAACATGGAAGGGGTAGCCATAGGAAGGAAAATCAATTTGAGGCTTTTCAACTCTTATCAGACACTTACAAACACCTTGATCAGCATGTTTGCTAAAGACCAAAAATTAGAGGAGGCTGAAGAAAGTTACACACTCACTTTTCAAAACGAGCAAGGGGATTGGCAGCTAGTAGAACATATTCCATGGCAATCCTTTGTGGGTACGGTGCGGCGTTTGGTGATACTGAGGAAAGGAAGTGAAACTATTTGA 678 0.4351 MELQLDLALPTHNPVEEFKLNKSKQIVSLELWGPSCGSESEKHVKHKRSFEESFEHFLKPLPLLVWSGQPNEEDDRSEKTRRNIHTPNMNGDEENHLVGWPPVKSWRRKELHQQHPARGQIRNERIQANENQSRGSNTLYVKVNMEGVAIGRKINLRLFNSYQTLTNTLISMFAKDQKLEEAEESYTLTFQNEQGDWQLVEHIPWQSFVGTVRRLVILRKGSETI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3466 225 MobiDBLite consensus disorder prediction 71 89 - -
Ssu1g3466 225 Pfam AUX/IAA family 37 224 IPR033389 -
Ssu1g3466 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 220 - -
Ssu1g3466 225 SUPERFAMILY CAD & PB1 domains 132 215 - -
Ssu1g3466 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 220 IPR003311 GO:0005634|GO:0006355
Ssu1g3466 225 MobiDBLite consensus disorder prediction 68 98 - -
Ssu1g3466 225 Gene3D - 139 224 - -
Ssu1g3466 225 ProSiteProfiles PB1 domain profile. 138 222 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3466 Ssu-Chr1 88893712 88894852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3466 127 220 B3 DNA Binding Superfamily AT5G62000 30.851 6.83e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu1g3466 AUX_IAA 1.2e-24 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3466 K14484 - gmx:100802759 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3466 1 88893712 88894852 Ssu1g3466 1 88893712 88894852 ECH