Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3461 ATGGGAAAACATTGGTCTTTCTTCCATATTATGGGCACCCTTTTCCTTTTGTCCAAAGTCTGTTTAGCTGGGATTCAATATACTGGCACGGTCTCACCGGGGTTAAAGGGTTCTCAAATGAATTGGATTGACAGAGAAGGCAGGTTCCTCGTGTCAAACGAGGGACAATTTGCCTTTGGCTTTGTCACCACAGGAAATGACTCCACCGAGTTTCTACTATCAATCATCCACGTGGCCACCTCCAAGGTAGTTTGGACTGCCAATAGAGCACTTCCTGTTGCTAACTCCGACAATTTTGTGTTTGATGACAAGGGCAACGCCTTCTTACAGAAAGATGGAACCGTGGTGTGGTCCACAAACACGAGTGGCAAAGGGGTTTCCTCAATGGAATTGCGCGACACGGGGAATTTGGTTTTGCTTGGGAGTGATAACAGTACAGTGATTTGGCAGAGTTTCAGCCATCCAACAGATACTTTGTTGCCGACTCAGGAGTTCTTAGAGGGAATGAAACTCATCAGCGATCCTAACCCAAACAACTTGACCTATGTTCTGGAGATCGAGTCTGGTAATGTTGTTCTCACCGCGGGTTTTCAAACTCCGCAGCCTTATTGGACTATGCAAAAGGACAACCGCAAGGTCACCAATAAGGACGGTGACGAGGTGGCTTCAGCAAACATTAGCGAAAACTCTTGGAGGTTCTATGACAAAGGCAAATCATTGTTGTGGCAATTCATTTTCTCTTCAGATCCAGGCACCAACGCGAGTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATCACTTTCTCTAACCTCGGCAGCGCAGGGTCAAATTCTGCTTCTGAAACAATACCCCAAGATCCTTGTGGTACGCCAGAACCTTGTGATCCATATAACATTTGCACAGGGGACCAAAGGTGTAGCTGCCCTTCTGTTATTCCCAGTTGCAAACCTGGTTTTGACTCTCCTTGTGGTGGTGACTCACAGAAGTCCATTGAGTTGGTTAAAGCTGATGATGGACTCGATTACTTTGCGCTTCAATTCCTTCAACCTTTTTCCAAAACCGATTTGGCTGGTTGCCAAACATCTTGCCGTGGAAACTGCTCTTGCCTTGCTTTGTTCTTTCACGGAAGTTCAGGGAACTGTTTCCTTTTGGATAGTGTAGGAAGCTTTGAGAAACCTGATTCTGATTCTGGTTATGTTTCTTACATTAAGGTCTCGAGAGATCAAGGCACTGGCACGGGTTCTGGGGGCAGTGGAAGTGGCAATAAGCACACCATAGTTATTGTGGTCATTGTCCTCTTAACCTTGCTTCTCATTTGTGGTCTGGTCTTTGCGGGAGTTAGGTGCCACAGGAAAAAGCAAAGGTTGCCTGAGTCTCCTAGAGAAGGTTCAGAAGAGGACAATTTCTTGGAGAATTTAGCTGGTATGCCAATCAGGTTCAGCTACAAGGACCTTCAAACTGCCACTAATAACTTCATTGTGAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTATAAAGGAGTTCTGCCAGATGGGACTCAAGTAGCAGTAAAGAAGTTGGAAGGCATTGGTCAGGGGAAGAAAGAGTTCAGGGCTGAAGTTAGCATCATTGGCAGCATTCATCACCTCCATTTGGTTAGGCTTAAGGGATTCTGTGCTGATGGAACTCATAGGCTTCTTGCTTATGAGTACATGCCTAATGGCTCCTTGGACAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCTGTTGGATTGGGATACCAGGTTTAATATAGCTCTGGGAACAGCTAAAGGACTTGCTTACCTGCATGAAGATTGTGACTCTAAGATTGTTCACTGTGACATCAAGCCAGAAAACGTGCTTCTGGACGACCACTTCATGGCCAAGGTTTCGGATTTTGGGCTGGCTAAGCTCATGAATAGAGAACAAAGCCACGTTTTCACAACACTGAGGGGCACCAGGGGCTATCTTGCCCCGGAGTGGATAACAAACTATGCCATATCAGAGAAAAGTGATGTCTATAGCTACGGAATGGTGCTGCTGGAGATCATTGGGGGAAGGAAAAACTTTGATGCTACTGAGACTTCAGAGAAATCCCATTTCCCAACTTTTGCTTTCAAGATGATGGAAGAAGGAAAGCTGAGAGATATTTTTGACTCGGAATTGAGGATTGATGAGAATGATGATAGGCTTCAATGTGCCATCAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCTATGAGGCCTTCCATGACCAGAGTTGTGCAAATGTTGGAGGGTCTTTGCACTGTTCCTAAGCCACCGACCAGTTCTTCCTTGGGCTCTCGCCTTTATTCCACTGTGTTCAAATCCTCCAGTGAAGCAGGCACTTCTTCTGGCCCATCAGACTCTAACAGTGATGCTAATCTCTCCGCGGTTCGCCTTTCAGGGCCTAGATAA 2445 0.4589 MGKHWSFFHIMGTLFLLSKVCLAGIQYTGTVSPGLKGSQMNWIDREGRFLVSNEGQFAFGFVTTGNDSTEFLLSIIHVATSKVVWTANRALPVANSDNFVFDDKGNAFLQKDGTVVWSTNTSGKGVSSMELRDTGNLVLLGSDNSTVIWQSFSHPTDTLLPTQEFLEGMKLISDPNPNNLTYVLEIESGNVVLTAGFQTPQPYWTMQKDNRKVTNKDGDEVASANISENSWRFYDKGKSLLWQFIFSSDPGTNASWIAVLGSDGFITFSNLGSAGSNSASETIPQDPCGTPEPCDPYNICTGDQRCSCPSVIPSCKPGFDSPCGGDSQKSIELVKADDGLDYFALQFLQPFSKTDLAGCQTSCRGNCSCLALFFHGSSGNCFLLDSVGSFEKPDSDSGYVSYIKVSRDQGTGTGSGGSGSGNKHTIVIVVIVLLTLLLICGLVFAGVRCHRKKQRLPESPREGSEEDNFLENLAGMPIRFSYKDLQTATNNFIVKLGQGGFGSVYKGVLPDGTQVAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCADGTHRLLAYEYMPNGSLDKWIFKKNKGEFLLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNFDATETSEKSHFPTFAFKMMEEGKLRDIFDSELRIDENDDRLQCAIKVALWCIQEDMSMRPSMTRVVQMLEGLCTVPKPPTSSSLGSRLYSTVFKSSSEAGTSSGPSDSNSDANLSAVRLSGPR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3461 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 2 814 - -
Ssu1g3461 814 Gene3D - 41 154 IPR036426 -
Ssu1g3461 814 CDD PAN_AP_plant 351 406 - -
Ssu1g3461 814 ProSiteProfiles Protein kinase domain profile. 490 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3461 814 MobiDBLite consensus disorder prediction 786 807 - -
Ssu1g3461 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 206 IPR036426 -
Ssu1g3461 814 MobiDBLite consensus disorder prediction 786 814 - -
Ssu1g3461 814 SMART blect_4 41 155 IPR001480 -
Ssu1g3461 814 Pfam D-mannose binding lectin 83 165 IPR001480 -
Ssu1g3461 814 SUPERFAMILY Protein kinase-like (PK-like) 473 761 IPR011009 -
Ssu1g3461 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 611 623 IPR008271 GO:0004672|GO:0006468
Ssu1g3461 814 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 814 - -
Ssu1g3461 814 Gene3D Transferase(Phosphotransferase) domain 1 565 769 - -
Ssu1g3461 814 PIRSF SRK 4 811 IPR024171 GO:0004674
Ssu1g3461 814 CDD STKc_IRAK 496 763 - -
Ssu1g3461 814 ProSitePatterns Protein kinases ATP-binding region signature. 496 519 IPR017441 GO:0005524
Ssu1g3461 814 Gene3D Phosphorylase Kinase; domain 1 458 564 - -
Ssu1g3461 814 ProSiteProfiles Bulb-type lectin domain profile. 35 152 IPR001480 -
Ssu1g3461 814 CDD B_lectin 47 155 IPR001480 -
Ssu1g3461 814 Pfam Protein kinase domain 493 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3461 814 SMART serkin_6 490 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3461 Ssu-Chr1 88815237 88817681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3461 434 772 Receptor kinase-like Gene Family AT5G20050 46.667 2.01e-97 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Ssu1g3461 Pkinase 4e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3461 - - gmx:100791158 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3461 1 88815237 88817681 Ssu1g3461 1 88815237 88817681 ECH
Ssu1g3461 1 88815237 88817681 Ssu5g0570 5 12569869 12572196 ECH
Ssu5g0570 5 12569869 12572196 Ssu1g3461 1 88815237 88817681 PCT