Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3460 ATGAGATTAGGTGTGAGTAAGCACGTTGTGCGGTGCTCAATCGGCACCGCTTCAGGCGAGCCCAAAACCGATTTTCCCGCCAAATTGCAACGGTCATCTTTCTCAACGGTCAAGTTCCGCCCCGACAATGCTTCTTCAGATTTAGCGGTTTCAAGTAGCAGCAGGAGAGGGCTCATATGCATAGCCACGTTACCGTGTCTTCTTCCACTCATTGATTGTTTCCCTGCCAATGCCATGCGGCCAGGTACAAAGGAATATCTTGTCATTAAAGAAGAGGTGAGGACAGTATTGTCAAAGGGAAAGGCTGCAGGCGTGCTTCGATTGGTTTTCCATGATGCTGGAACCTTTGATATCGATGACAATACCGGTGGTATGAATGGTTCTATAGTCTATGAACTTGAAAGACCCGAAAATGCTGGTCTGAAAAAATCAGTAAAGGTTCTGCAGAAAGCAAAGACTCAGATAGATGCTATCCAACCAGTATCTTGGGCGGACATGATTGCTGTGGCTGGAGCTGAAGCAGTTGAAGTATGTGGAGGTCCACCTATCCAAGTTTCACTGGGCAGACTAGATACACCGGTACCTGATCCTGAAGGGAGACTTCCTGAGGAATCTCTCAATGCTTCtgatttgaaaaaatgtttCCAGAGAAAAGGCTTTTCAACACAAGAACTTGTGGCTTTGTCTGGAGCCCACACTCTTGGAAGTAAAGGTTTTGGAAGCCCAATTTCTTTTGACAATTCATATTATAAGGTTCTTTTGGAGAAGCCGTGGACATCTGCAGGTGGTATGTCGAGTATGATTGGTCTTCCTTCAGATCACGCTCTTGTTGAGGACGATGAATGCTTAagATGGATTAAAAAATACGCAGACAGTGAGAATCTGTTCTTTGAAGATTTCAAAAATGCGTACGTCAAGCTGGTGAATTCTGGTGTGAGGTGGAAGAACTTGTAA 954 0.4444 MRLGVSKHVVRCSIGTASGEPKTDFPAKLQRSSFSTVKFRPDNASSDLAVSSSSRRGLICIATLPCLLPLIDCFPANAMRPGTKEYLVIKEEVRTVLSKGKAAGVLRLVFHDAGTFDIDDNTGGMNGSIVYELERPENAGLKKSVKVLQKAKTQIDAIQPVSWADMIAVAGAEAVEVCGGPPIQVSLGRLDTPVPDPEGRLPEESLNASDLKKCFQRKGFSTQELVALSGAHTLGSKGFGSPISFDNSYYKVLLEKPWTSAGGMSSMIGLPSDHALVEDDECLRWIKKYADSENLFFEDFKNAYVKLVNSGVRWKNL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3460 317 Gene3D - 90 311 - -
Ssu1g3460 317 Pfam Peroxidase 92 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 ProSitePatterns Peroxidases proximal heme-ligand signature. 224 234 IPR019793 -
Ssu1g3460 317 ProSiteProfiles Plant heme peroxidase family profile. 102 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 SUPERFAMILY Heme-dependent peroxidases 99 316 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PANTHER L-ASCORBATE PEROXIDASE 6-RELATED 1 314 - -
Ssu1g3460 317 PRINTS Haem peroxidase superfamily signature 224 239 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Haem peroxidase superfamily signature 102 116 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Haem peroxidase superfamily signature 179 191 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Haem peroxidase superfamily signature 161 178 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Plant ascorbate peroxidase signature 179 191 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Plant ascorbate peroxidase signature 288 312 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Plant ascorbate peroxidase signature 200 217 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Plant ascorbate peroxidase signature 218 239 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Plant ascorbate peroxidase signature 160 178 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Plant ascorbate peroxidase signature 120 130 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PRINTS Plant ascorbate peroxidase signature 102 117 IPR002207 GO:0004601|GO:0006979|GO:0020037
Ssu1g3460 317 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 1 314 IPR044831 GO:0004601|GO:0034599
Ssu1g3460 317 ProSitePatterns Peroxidases active site signature. 102 113 IPR019794 GO:0004601
Ssu1g3460 317 Gene3D Peroxidase, domain 2 202 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3460 Ssu-Chr1 88810191 88814383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3460 102 307 Peroxidase AT4G16270 32.319 2.02e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3460 K00434 - gmx:100792735 555.058