Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3455 ATGCCTCAGCTGCTACACGGGACGCTTAAGGTAACCATATTTGAAGTTGATAGACTACATACCGGATGTCATTTTGATTTCTGTCAGAAGGGCACAACACACAAGGGGAAGAGATTTCTAGCCCAAGTCAAGGGTTGTCTGCTGTGCCGGCCTGAGATTGTCGGGACGAGACTCTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGACGAACTAGAATGATAGGAAACCAACCCTCTCACCCCAAGTGGAACGAGACCTTTGAAATCTACTGTGCCCATAAAATCTCAAACATTGTTTTCACGGTCAAAGATGGTAACCCAATTGGAGCAACTCTAATTGGAAGAGCCTATATCCCCGTGGAGCAAGTTATCAGAGGCCCCATAGTTAAGCGATGGGTTGAGATATTAGATGAAGAAGATCACCGTCCCGTACCGGGTCACTCCAAAATCTGTGTCAGTGTGCAATTCTACGACGTTACCGAGGACACAACATGTCCATGGTCTCGGGGAATACGCATGCCATTCATGGGAGTTCCTCGTACATTTTTCAATCAGAGAGAAGGTTGCAATGTTACTTTATACCAAGATGCTCATACCCTACGTGGCGCTCGTGTTGATCCATGGGTTCCAATATCCGAAGGAATAGACTACATACCTGCAAGATGTTGGGAGGACATTTACATTGCCATTAGGGACGCTAAGCACTTTATTTACATAGCTGGTTGGTCTGTTTACACTGAAATAACCTTAGTTAGAGACAACGAGGAATATTCAAACATCACCCTTGGGGAGTTACTTAAGAAGAAAGCTGATGAAGATGTTAAAGTTCTTTTGCTTGTTTGGGATGACATAACTTCTGTTCCAGATTTCAAGAAAGACGGCTTGATGGCAACCCACGATCAAGAAACTGCTGCTTACTTTAAAAACACAAGGGTTCATTGTGTCTTGTGTCCACGGAACCCGGATGATGGAAGAAGCATAATTCAAGGCCTTCAAATCTCAACAATGTTCACTCATCATCAGAAGAGTGTAGTTGTGGATGGCCATGTTGTAGGATCATCACAAAAGCGAAGTGTCATAAGTTTCATAGGTGGCATTGATCTTTGTGATGGGAGGTATGATACTCAGGAACACCCTCTATTTTCAACTCTGAACACAGTCCATCATGATGATTTCCATCAGCCAAATTTCCCAGGTGCTTCCATCAAGAAAGGCGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGTTAGAAGGATCTGTTGCTTGGGATGTTTTGTCCAATTTTCAGCAAAGGTGGGAGAAGCAGGTTGGGAATCAGCTCCTATTCCCTTCAAGCATGCTTGATGAGTACTTTGTCCCTCAATCCACTGTGGCAACAACAGATGAAAATGAGACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCTGCTTCTGGCTTCCCCCGAAACCCAGAAGAAGCGGCTGAATTAGGCCTTGTTAGTGGGAAAGATAACATCATTGACAGAAGCATTCAAGATGCTTATATAAATGCTATTCGACGTGCCAAAAACTTCATCTACATTGAAAACCAGTATTTCCTAGGGAGTTCATATGGTTGGCAAGCATCTGATATTAAGGTTGAGGATATTGGTGCTTTGCATCTTATACCAAAGGAGTTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGGGAGAGGTTTTCTGTGTATGTTGTTATACCAATGTGGCCAGAAGGCATACCTGAGAGTGCTTCAGTTCAAGCAATATTAGACTGGCAGAGGAGGACAATGGAGATGATGTATGCTGATATAGCTGAAGCCATTGAGAGAAATGGTGTTGAAGCCAACCCAAGGGACTACTTGACCTTTTTCTGCCTTGGAAACCGAGAgggaaagaaagataaagaatatACTCCTACTGAGGCACCAGAGCCTGATAGTGATTATAGTAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATGATTATTGGTTCTGCCAACATAAACCAAAGATCAATGGATGGAGCAAGAGACACTGAGATTGCAATGGGTGCATTCCAACCACGTCATATAGATTATTATGGGCCACCCAGAGGACAAATATATGGATTCCGACGTGCACTGTGGTATGAGCACCTCGGGAATGTTGATGATACAAACATCTTTGACTATCCAGCAAGAGTGGACTGCATCAGGCTTGTGAATCATCTTGCTGAGACCAACTGGGACATATACTCTAAGGAAACTCTTGATGAGTATATAACATTTCACCACCTCATGCGCTACCCCATAGAAGTAACTGACAATGGAGCCATAACGACCCTTCCAGGGCTTGAATATTTTCCGGACACTAAGGCTCGGATTTTGGGTTCCAAATCAGATTACCTTCCTCCAATTCTCACCACCTAG 2463 0.4324 MPQLLHGTLKVTIFEVDRLHTGCHFDFCQKGTTHKGKRFLAQVKGCLLCRPEIVGTRLYATVDLDKARVGRTRMIGNQPSHPKWNETFEIYCAHKISNIVFTVKDGNPIGATLIGRAYIPVEQVIRGPIVKRWVEILDEEDHRPVPGHSKICVSVQFYDVTEDTTCPWSRGIRMPFMGVPRTFFNQREGCNVTLYQDAHTLRGARVDPWVPISEGIDYIPARCWEDIYIAIRDAKHFIYIAGWSVYTEITLVRDNEEYSNITLGELLKKKADEDVKVLLLVWDDITSVPDFKKDGLMATHDQETAAYFKNTRVHCVLCPRNPDDGRSIIQGLQISTMFTHHQKSVVVDGHVVGSSQKRSVISFIGGIDLCDGRYDTQEHPLFSTLNTVHHDDFHQPNFPGASIKKGGPREPWHDIHCKLEGSVAWDVLSNFQQRWEKQVGNQLLFPSSMLDEYFVPQSTVATTDENETWNVQLFRSIDGGAASGFPRNPEEAAELGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWQASDIKVEDIGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESASVQAILDWQRRTMEMMYADIAEAIERNGVEANPRDYLTFFCLGNREGKKDKEYTPTEAPEPDSDYSRAQKSRRFMIYVHAKMMIVDDEYMIIGSANINQRSMDGARDTEIAMGAFQPRHIDYYGPPRGQIYGFRRALWYEHLGNVDDTNIFDYPARVDCIRLVNHLAETNWDIYSKETLDEYITFHHLMRYPIEVTDNGAITTLPGLEYFPDTKARILGSKSDYLPPILTT 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3455 820 Gene3D Endonuclease Chain A 478 708 - -
Ssu1g3455 820 SUPERFAMILY Phospholipase D/nuclease 497 737 - -
Ssu1g3455 820 Gene3D Endonuclease Chain A 217 467 - -
Ssu1g3455 820 Gene3D C2 domain 3 157 IPR035892 -
Ssu1g3455 820 PANTHER PHOSPHOLIPASE D 3 820 IPR015679 -
Ssu1g3455 820 SUPERFAMILY Phospholipase D/nuclease 179 446 - -
Ssu1g3455 820 PIRSF PLD_plant 1 820 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu1g3455 820 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 336 373 IPR001736 GO:0003824
Ssu1g3455 820 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 663 690 IPR001736 GO:0003824
Ssu1g3455 820 PANTHER PHOSPHOLIPASE D ALPHA 3 3 820 - -
Ssu1g3455 820 SMART C2_3c 8 133 IPR000008 -
Ssu1g3455 820 CDD C2_plant_PLD 1 158 - -
Ssu1g3455 820 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Ssu1g3455 820 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 160 IPR035892 -
Ssu1g3455 820 Pfam Phospholipase D Active site motif 664 690 IPR001736 GO:0003824
Ssu1g3455 820 Pfam Phospholipase D Active site motif 336 373 IPR001736 GO:0003824
Ssu1g3455 820 Pfam C2 domain 8 135 IPR000008 -
Ssu1g3455 820 SMART pld_4 336 373 IPR001736 GO:0003824
Ssu1g3455 820 SMART pld_4 663 690 IPR001736 GO:0003824
Ssu1g3455 820 Pfam Phospholipase D C terminal 738 810 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3455 Ssu-Chr1 88681735 88694736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3455 3 820 Phospholipase D Gene Family (Wang group) AT3G15730 64.294 0.0 1063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3455 K01115 - gmx:100794115 1321.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3455 1 88681735 88694736 Ssu1g3455 1 88681735 88694736 ECH