Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3454 ATGTGTCCTGCTCCACTTCCACTTTCCGTCCAATCCTCACCGACAACCCATATAAATTTCGTTAAGAGTTATTCCACTCTCCCTAACTCTAACTCACTTGCACACTTGACGTTGTACCTCAAATCCCTATTAATTCCCTTCACCTCCCCCCTTGTACTTACTTCCTTCTCTATCTCCAACTCTTTCTttacacttctctctctctctctaacccCCACTTTCTCACGCGCCAGCCAGCCCCAACACAAAGATATGGTACAAGCAAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCATTACTGAAGAGGAGGGTGTGGCTAGGGACATTTGAGACAGCTGAGGCTGCAGCAAGGGCATATGACCAGGCAGCCATTTTGATGAATGGTCAGAATGCCAAGACCAATTTTCCCACCTCAAAGAACCAAGCTGAAGATGCCACCCCTTGTGGTGGTGATGACACTTTCTTGTCTCCCAAAGCTCTTTCAGAGTTGCTTAGCACAAAGCTGAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGTCTGAGGCTAGATGCTGACAATTCCCACATTGGCGTGTGGCAAAAAGGGGCAGGACCACATTCTGCCTCCAACTGGGTCATGAGGGTGGAGCTTGGCAAGAAACACACCCAGGGTGATCAGTCAACGGGGTCGCCACACAGTACCAATGGTGTTGCTGCTGGAAATGAGGTGGAAGAAGAGGACAGAGTTGCTTTGCAGATGATTGAGGAGCTTCTCAATTGGAACTACCCTTGTGGCGCTTCAACTTCTTCTTCAAGTAGTAACCCCCAGCAGCTCATGCAGGAAGAGAAAAGGAGCCTTAATCCGTGTCATATATAG 894 0.4787 MCPAPLPLSVQSSPTTHINFVKSYSTLPNSNSLAHLTLYLKSLLIPFTSPLVLTSFSISNSFFTLLSLSLTPTFSRASQPQHKDMVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPTSKNQAEDATPCGGDDTFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSASNWVMRVELGKKHTQGDQSTGSPHSTNGVAAGNEVEEEDRVALQMIEELLNWNYPCGASTSSSSSNPQQLMQEEKRSLNPCHI 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3454 297 Gene3D AP2/ERF domain 89 149 IPR036955 GO:0003700|GO:0006355
Ssu1g3454 297 CDD AP2 89 149 IPR001471 GO:0003700|GO:0006355
Ssu1g3454 297 Pfam AP2 domain 90 139 IPR001471 GO:0003700|GO:0006355
Ssu1g3454 297 SUPERFAMILY DNA-binding domain 90 149 IPR016177 GO:0003677
Ssu1g3454 297 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 85 272 - -
Ssu1g3454 297 MobiDBLite consensus disorder prediction 228 243 - -
Ssu1g3454 297 ProSiteProfiles AP2/ERF domain profile. 90 147 IPR001471 GO:0003700|GO:0006355
Ssu1g3454 297 MobiDBLite consensus disorder prediction 271 297 - -
Ssu1g3454 297 SMART rav1_2 90 153 IPR001471 GO:0003700|GO:0006355
Ssu1g3454 297 MobiDBLite consensus disorder prediction 271 289 - -
Ssu1g3454 297 PRINTS Ethylene responsive element binding protein signature 91 102 IPR001471 GO:0003700|GO:0006355
Ssu1g3454 297 PRINTS Ethylene responsive element binding protein signature 113 129 IPR001471 GO:0003700|GO:0006355
Ssu1g3454 297 MobiDBLite consensus disorder prediction 226 248 - -
Ssu1g3454 297 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 85 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3454 Ssu-Chr1 88671779 88672899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3454 85 275 AP2-EREBP Transcription Factor Family AT5G25390 62.500 4.44e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g3454 AP2 3.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3454 - - lang:109326202 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3454 1 88671779 88672899 Ssu1g3454 1 88671779 88672899 ECH
Ssu1g3454 1 88671779 88672899 Ssu5g0578 5 12806947 12807940 ECH
Ssu6g1025 6 16749323 16750238 Ssu1g3454 1 88671779 88672899 ECH