Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3450 ATGGGAGAAACAAAGGACGAAGCATACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGAAGACAAGGCCCCCGACTCCGTCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTTCTTCGCGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGTGCAACATGAATGCATACCTCAAGCAATTCTCGGGATGGATGTAATTTGTCAAGCAAAATCTGGAATGGGAAAGACTGCTGTGTTTGTTCTCTCAACTTTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCGCTTGTTCTGTGTCATACAAGAGAATTGGCATACCAGATATGTCATGAGTTTGAGAGGTTTAGCACCTACTTACCTGATCTCAAGGTTGCTGTCTTTTATGGTGGAGTCAACATCAAGGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCTGGAAGAATACTAGCATTGACTAGGGATAAGGACCTTTCCTTAAAGAATGTTAGACATTTCATATTAGATGAATGCGACAAGATGCTGGAATCACTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCGATGgaaatttatgttgatgatgaggCTAAGTTGACCCTTCACGGACTAGTGCAGCACTACATCAAAttgaaagaggaagagaaaaaccGAAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGACATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCTGCAGACACATACTTGCACAGGGTTGGCCGAGCTGGAAGATTTGGAACCAAAGGCCTTGCAATCACATTCGTTTCATGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCAAGGTTTGAGGTGGATATAAAACAGCTTCCTGAGCAGATTGATACCTCTACCTATAGTATGTGTTTTTTCATCCGTTGA 1296 0.412 MGETKDEAYEEELLDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYSMCFFIR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3450 431 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 397 IPR027417 -
Ssu1g3450 431 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Ssu1g3450 431 SMART helicmild6 302 383 IPR001650 -
Ssu1g3450 431 Gene3D - 259 427 IPR027417 -
Ssu1g3450 431 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Ssu1g3450 431 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Ssu1g3450 431 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Ssu1g3450 431 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Ssu1g3450 431 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Ssu1g3450 431 Gene3D - 42 258 IPR027417 -
Ssu1g3450 431 SMART ultradead3 65 266 IPR014001 -
Ssu1g3450 431 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g3450 431 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
Ssu1g3450 431 CDD DEADc_DDX39 45 252 - -
Ssu1g3450 431 CDD SF2_C_DEAD 263 392 - -
Ssu1g3450 431 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3450 Ssu-Chr1 88616730 88621620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3450 1 424 Eukaryotic Initiation Factors Gene Family AT5G11200 83.262 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3450 K12812 - gmx:100808957 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3450 1 88616730 88621620 Ssu1g3450 1 88616730 88621620 ECH
Ssu5g0582 5 12892137 12898769 Ssu1g3450 1 88616730 88621620 PCT