Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3447 ATGAGGCTCTTTGCCTTTGTAATCTTTTCAAGCCTATTGCTCAAACAAGTAAGCCTAGTTCTTGGAGACGTAGGTACAGCTGCTTCTTATGGACCACCATACATACCTACCGCTTGCGATGGAAATAGGGCAGGGCAGTTTCCTCCGGGAAATCTTTTTGTGGCTGTGAATGAAGGGTTGTGGGATAACGGGGCAGCCTGTGGAAGGAGATACAGAATAAGGTGCGTGAGTGGAAACAATAGGCCATGCAAAGGTGGTAGTATCGATGTTAAAGTGGTAGATTCCTGTCCAGTGTCACCATGTCCCAACACCCTCCTCATGTCAAATGATGCCTTCGCAGCTATTTCACGCTTCCCTCGTGCAAAAATCAATATTGAATATACCCAGTAA 390 0.4615 MRLFAFVIFSSLLLKQVSLVLGDVGTAASYGPPYIPTACDGNRAGQFPPGNLFVAVNEGLWDNGAACGRRYRIRCVSGNNRPCKGGSIDVKVVDSCPVSPCPNTLLMSNDAFAAISRFPRAKINIEYTQ 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3447 129 Pfam Lytic transglycolase 55 127 IPR009009 -
Ssu1g3447 129 Gene3D - 23 129 IPR036908 -
Ssu1g3447 129 PANTHER RLPA-LIKE PROTEIN, DOUBLE-PSI BETA-BARREL-RELATED 2 129 - -
Ssu1g3447 129 SUPERFAMILY Barwin-like endoglucanases 21 129 IPR036908 -
Ssu1g3447 129 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 25 129 IPR007112 -
Ssu1g3447 129 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 2 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3447 Ssu-Chr1 88538503 88539145 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3447 1 117 Expansin Gene Family AT2G45110 29.104 2.08e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3447 - - gmx:100792215 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3447 1 88538503 88539145 Ssu1g3447 1 88538503 88539145 ECH