Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3443 ATGGCTGTGGCGTTTCAGTGTTTATCGTGTGCTCGGAGTGAGCCCTTCCTCACAGCAAGGCAATCCCTCACTCTTCCTTTCCAACGCAAACCTTTTTTTTGCTCCGTTCCTCTTTCCTCTCGCGCTCGTAACCTCTGCTCTTCAATTGTCGCTGCCtcttccaaaaagaaaaacaagAAAAAATTGTCTCGTGGTCATGTTACGGAGGGCGATGAGGAGGACGAGGACGCGTTTGAGCTGCTCTTCAAGCAACTCGAAGAAGATCTCAAACGCGATGATTTGTCAGAAGATGATGGCGAAGATGAGATAACTGAAGAAGACATGGCATTGCTTGAACGTGAGTTAGAAAGTGCATTGGGGGACTTTGATGCTGAATTGTTGAACTCGGATGTAAACGACACAGAAGCTGGTAGTGATCcagaaaatgatgatgatgatgatgatggacaTGAAAGGTCACCGAAGCTTAAGAATTGGCAGATGAAGAAATTGGCTAGAGCTTTAAAAGCTGGCCGCCGTAAAACAAGTATAAAAAATCTTGCTGCCGATCTTTGTCTTGATAGGGCTCTTGTTCTTCAATTGCTTCGTGACCCTCCTCCAAATCTTTTAATGATGAGTCTATCAATACCTGATGAACCCACAACAACAGTGGTATCACTTGAAAGTAAGCCCAGAGAAATTGTTCATAAAGAAACAAGTATTGAGCATGCAGAATCTGTACCCAAGGCTTTACCTGTTCATACCTTGCAACGTAATTGGTATGCTCAAAAGAGATTGAAAAAGGCCCATGTTGACACTCTGGAGAGAGTTTATAGGAGGTCAAAACGACCTACTAATGCAATGATCAGTAGCATTGTACATGTAACAAACATTCCTCGGAAAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCGCCGACTTCCTTACCAGCGCTCTGTTCCTGAAACTGCTTGA 975 0.4205 MAVAFQCLSCARSEPFLTARQSLTLPFQRKPFFCSVPLSSRARNLCSSIVAASSKKKNKKKLSRGHVTEGDEEDEDAFELLFKQLEEDLKRDDLSEDDGEDEITEEDMALLERELESALGDFDAELLNSDVNDTEAGSDPENDDDDDDGHERSPKLKNWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQLLRDPPPNLLMMSLSIPDEPTTTVVSLESKPREIVHKETSIEHAESVPKALPVHTLQRNWYAQKRLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDRRLPYQRSVPETA 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3443 324 ProSiteProfiles 'Homeobox' domain profile. 250 310 IPR001356 GO:0003677
Ssu1g3443 324 PANTHER HOMEOBOX PROTEIN 8 15 319 - -
Ssu1g3443 324 CDD homeodomain 256 305 IPR001356 GO:0003677
Ssu1g3443 324 Pfam Homeodomain 258 306 IPR001356 GO:0003677
Ssu1g3443 324 Gene3D - 252 311 - -
Ssu1g3443 324 MobiDBLite consensus disorder prediction 131 158 - -
Ssu1g3443 324 SMART HOX_1 256 314 IPR001356 GO:0003677
Ssu1g3443 324 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 15 319 - -
Ssu1g3443 324 SUPERFAMILY Homeodomain-like 252 314 IPR009057 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu1g3443 Homeodomain 5.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3443 - - gmx:100798718 507.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3443 1 88509672 88512839 Ssu1g3443 1 88509672 88512839 ECH