Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3438 ATGTCAGCATCTCGTATTTTTGATACCATCAATGAATGTCTCTCCCTGGTTCATTCAGATTCCATTGAAGTTCAGGAGAAAGCGCTTCAAACGCTAGCTTCCATCACCAAGGTCAGTCCCCAGAACAGAACCTTGCTCGCTCAAACAGATAAAGCCATCCCAACATTAGCCACTCTAACAAACGCTTCCTCCCCCATCATTAAGACACTTTCCTTGTTGATCCTCTTCAATCTGTCCCTGAACCCTGATCTGAAGCAGTCTCTTGCTGACATGGAAACCATTTATTACCTCAATTCCCTCATTACTACCTCATCGTGTTCCCTTGATTCCTCCAAATTGGCCTCCTCATTGATTTGCAGCTTGGCCATGCATGACAAAAACAAGGCCAAATTTGGGGTGGCAGGCACAGTTCAGTTGCTAGTGAAAGCCATTGAAGGCTCTCATGGTTCTGATGCCCATCACCTTTTGAGTTCTTTGGCTGAGCTTGTTCATTTTCATGGAAACTGCACTTTGGCCGTGCGAGCCGGGGCAGTTCCAGTGCTGCTTCGGGTTGTGAAGGGCActaataatgatgaggacttgGCTGGAACATCTCTCGCTGTTCTTAATCTCCTTGCGAGGTTTGATGAAGGGTTAAATGGTTTGAAGAAAACGGATGAGATAGTTAAGGCAATGTTGAGTGTGTTGAAAGGGAGGTCCTTGTTGAGTAAGGAGGGTGCAGCTGATATCCTTCTTCGCCTTTTTGATGACAGTGAAGCCTGTGTCACTGAGGCTTTGATGTTGCCGGAATTTTCAACCGTGTTGGCTGATCTTTGTGTGAGGGGTTCGGTGAGAGTTCGAGACAAGGCGGATTTGTTAATGAGGAAGATGGCAAAGGTGAGCTTAGACTCTGATTTGGAAGCAAGCTCCCTGCATGGTTGTTAA 924 0.4556 MSASRIFDTINECLSLVHSDSIEVQEKALQTLASITKVSPQNRTLLAQTDKAIPTLATLTNASSPIIKTLSLLILFNLSLNPDLKQSLADMETIYYLNSLITTSSCSLDSSKLASSLICSLAMHDKNKAKFGVAGTVQLLVKAIEGSHGSDAHHLLSSLAELVHFHGNCTLAVRAGAVPVLLRVVKGTNNDEDLAGTSLAVLNLLARFDEGLNGLKKTDEIVKAMLSVLKGRSLLSKEGAADILLRLFDDSEACVTEALMLPEFSTVLADLCVRGSVRVRDKADLLMRKMAKVSLDSDLEASSLHGC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3438 307 SUPERFAMILY ARM repeat 9 291 IPR016024 -
Ssu1g3438 307 PANTHER U BOX DOMAIN-CONTAINING 1 298 - -
Ssu1g3438 307 Gene3D - 154 302 IPR011989 -
Ssu1g3438 307 Gene3D - 3 153 IPR011989 -
Ssu1g3438 307 PANTHER KINESIN-ASSOCIATED PROTEIN 1 298 - -
Ssu1g3438 307 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 176 206 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3438 19 283 U-box Gene Family AT1G23030 25.641 6.32e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3438 - - gmx:121174819 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3438 1 88220979 88221902 Ssu1g3438 1 88220979 88221902 ECH