Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3437 ATGACAAAGAAGAAGAGTCCCCTGGTGTTTATGGATGTGTCCATCGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTATGACGTTGCTCCCAAGACTGCAGAAAACTTTCGTGCATTATGTACagGAGAAAGAGGTGTCAGTCCAAATACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCAGATTATAAAAGGTTCCATCGTGCAGgGTGGAGATTTTGTCAATCGAAATGGGACTGGTGGTGAAAGCATATATGGATTGAAGTTCCCAGATGAGTCACCTAGGCTAAAGCATGATGCTCCAGGCCTTTTATCAATGGCAATTGCAGACCGTGACACTCTTGGTTCTCATTTTAGCATCACTTTGAAAGCTGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAGCTTGTGCAAGGACATAATGTattgaagaaaattgaagaagtgGGTGATGAAGAAGGGCATCCACCTGTAACtgttaaaatcattaattgtgGTGAATATAGCGAGGATGGAAAGAAggtaaataaatcaaaaatgggaaGGGATGGATCTTCTGAAGCCAATAGTCATGAAACACGGAGGAAGGGAAAGcataaaaaatcttcaaaagacagaaagaaaaggagaagataCTACTCATCTGAATCGGGGAGCTCTTCAGATTCTGACACGGAATCTTCGGAAACAGATAGTGATTCTGAGTCAGATATGTCCTCATCATCTTCCATAAGTTCTTCTAGTGATGACAGgcgaaggaagagaaagagatcTAAGAAAGATAAATATAGACGAGGAAAAAGAAGGGATAAACGCCGTGACAAGAGACGAGGGAGAAGGGATAAGAGATTGAAGCGTAAATCAAGAAGGGAATCAGGCAGTGATTCAGATAGTGAGAGTAACAGTGACGGTAGCTCTGAAGGTGGAAGCATTGATGCACAACAGAAAGTGCTGAAGCGTAAAGATCATTCTcagaaaaatgCTGAAATAAAGTCTCCCTTAGTTGTGGAGAAAGATTTACCTCCTGGACATCATAAAAAGGAGGAAGTGGGTATGctagagaatgaggaaaaattCTCAAAGGAAAACGGAGAGCGACGTAGCAATGGCATTGGAGGAGCTGACTACAGATCTGACAGAAGTGAAGAGAGGCAGCCTGATGTTATGGATGATCACTCGGTCAAAACTAGGAGTCGAAGTGCAAGTCCTAAGCGATCCATGAGTAAGAGTATGAGTATTAGTCCCAAGAGGAGTGGGAGCAAGAGCCCAAGTGTTACGCCAAAAAGGAGATTGAGCAAAAGTCCAAGTGTTAGTAGAAGCCCTCCTCCATCAAGGAGGAGTTTGGGCAGAAGTCCTGCTAGAAGTATCAGCAGGAGTCCGAACAGAAGCGTCAGTAGAAGCCCAGTGAGGGCTGGGAAGGGGAGAAGTGTCAGTAGAAGCCCAGTGAGAACTCGTTCTATTAGAAGTGTCAGCAAGAGCCCTGTAAGATCCCATTCTCGAAGCCACCGGAGCAGGAGTTCTCCTAGAGCACCATCGAGAAAAACAATCAGCAGAAGCCCTGTACGAGTGTTGAGAAAGAGTGTAAGCCGCAGTCCAGTTAGATCACCTGCAAGAAGTTTAAGCAGAAGCTCTGGCAGGGTTCCGTCAAAGAGAAGCATCAGCCGAAGCCCGGTCAGAGCACCTAGTAGAAGCAATCGCCGCAGTTATTCTAGGAGTCCTAGCCCTGTTCGTAGGACAAAGACACCTCGTGGGAGGAGTGTGTCAAGGAGTGATTCACCTGATGCTTCGCCAAAGCGTATCAGAAGGGGAAGAGGTTTCAGTGAACGATACTCTTATGCTAGAAGGTATAGAACCCCTTCCCGATCTCCTGTGAGGTCATACCGCTACAATGGAAGAAGTGACCGAGACAGATATTCTAGTTACAGAAGGTATTCCCCTAGGCGTTTCAGGAGCCCACCACCACGTGGAAGAACTCCCCCAAGGTATCGAAGCAGAAGGAGCAGGACCCCATCTGTTTCACGCAGCCCACGATATCGTGCTCGACGATATAGCCGAAGTAGGAGCCCAGTTCGCAGTCGTTCCCCAGTGGAACCATATCGATCCCGCCCCTCTCCTCATGTGGAGAGGCATGCATCTTCTTCTCGGAGCAGGAGCAGGAGCAGGAGTCCATCGAAATCCCGGTCTGGGTCTAGGTCTTCTACGGAATCTCAATCTCCGCAAAGAGCAAGTAGAGACAGCAGGTCCAGGTCATCATCCAGAAGCCCAGATGGAAAGAAAGGCCTGGTCTCATATGGTGATGGTTCTCCATACTCAGGTGAAAGGTAA 2346 0.4437 MTKKKSPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGVSPNTGKSLHYKGSFFHQIIKGSIVQGGDFVNRNGTGGESIYGLKFPDESPRLKHDAPGLLSMAIADRDTLGSHFSITLKADHHLDRKHVVFGKLVQGHNVLKKIEEVGDEEGHPPVTVKIINCGEYSEDGKKVNKSKMGRDGSSEANSHETRRKGKHKKSSKDRKKRRRYYSSESGSSSDSDTESSETDSDSESDMSSSSSISSSSDDRRRKRKRSKKDKYRRGKRRDKRRDKRRGRRDKRLKRKSRRESGSDSDSESNSDGSSEGGSIDAQQKVLKRKDHSQKNAEIKSPLVVEKDLPPGHHKKEEVGMLENEEKFSKENGERRSNGIGGADYRSDRSEERQPDVMDDHSVKTRSRSASPKRSMSKSMSISPKRSGSKSPSVTPKRRLSKSPSVSRSPPPSRRSLGRSPARSISRSPNRSVSRSPVRAGKGRSVSRSPVRTRSIRSVSKSPVRSHSRSHRSRSSPRAPSRKTISRSPVRVLRKSVSRSPVRSPARSLSRSSGRVPSKRSISRSPVRAPSRSNRRSYSRSPSPVRRTKTPRGRSVSRSDSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRSDRDRYSSYRRYSPRRFRSPPPRGRTPPRYRSRRSRTPSVSRSPRYRARRYSRSRSPVRSRSPVEPYRSRPSPHVERHASSSRSRSRSRSPSKSRSGSRSSTESQSPQRASRDSRSRSSSRSPDGKKGLVSYGDGSPYSGER 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3437 781 MobiDBLite consensus disorder prediction 407 473 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 591 622 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 178 200 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 539 590 - -
Ssu1g3437 781 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 453 - -
Ssu1g3437 781 SUPERFAMILY Cyclophilin-like 5 176 IPR029000 -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 724 752 - -
Ssu1g3437 781 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Ssu1g3437 781 MobiDBLite consensus disorder prediction 502 516 - -
Ssu1g3437 781 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 453 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 635 650 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 345 372 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 486 501 - -
Ssu1g3437 781 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Ssu1g3437 781 MobiDBLite consensus disorder prediction 305 319 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 379 405 - -
Ssu1g3437 781 Gene3D - 1 175 IPR029000 -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 321 335 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 178 781 - -
Ssu1g3437 781 MobiDBLite consensus disorder prediction 201 215 - -
Ssu1g3437 781 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Ssu1g3437 781 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Ssu1g3437 781 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Ssu1g3437 781 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Ssu1g3437 781 MobiDBLite consensus disorder prediction 259 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3437 Ssu-Chr1 88213664 88218853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3437 25 170 U-box Gene Family AT5G67530 41.216 1.24e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3437 K09566 - gmx:100800303 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3437 1 88213664 88218853 Ssu1g3437 1 88213664 88218853 ECH