Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3430 ATGTCGACGCGTGCCAAGAAGAAGTTTGCGAGGTTGTGTTGCAGCCATGATGAGACAGCGGATGACGAGAGACACAGAAATCGAATAGAGATTGATCAAATGTCGGTGGACGATGGCAGCCAATACAGCCTCAACCGCGTTCCGCTTCCTTCTCTCGGCGCCGCCGCCAGCTGCCGGAGACCCAAGCTCCGGAGTTTTATTGTCTCGCCGTACAACCCTCGTTACAGACTGTGGGAGACGTTTCTGGTGTTATTAGTTTTCTACACTGCATGGGTTTGCCCGTTTGAGTTTGGCTTCCTTAATGAACCGGAGGATCCCCTGTCCATTACTGACAATGTGGTGAACGCTTTTTTTGCCATTGACATTGTTCTCACCTTCTTTGTTGCCTACCTCGACAAGGCTTCATATCTGCTCGTGGACCAACCAAAGCTCCTTGCCTTGAGATATGCCAGAACATGGCTCGCCTTTGATGTCATCTCCACCATCCCTTCTGAACTTGCCCGCAGCGTGTTGCCCCCTCCTCTTAAGACATATGGCTACTTCAATATGCTACGTCTTTGGCGTCTACGTAGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGATAGAAATTATAACTACTTCTGGGTGCGCTGTTTAAAGCTTATATGTGTTACTCTATTTTCAGTGCATTTTGCTGCCTGCTTTTACTATTTTCTTGCATTAAAACATGAACAAAAATCAACGTGGCTTAGCCTGGTTTCTGATAACAATCAACAGAATGTTTGGAGTCGCTACGTAACATCGATGTACTGGTCCATAGTGACTCTTTCAACAGTCGGTTATGGTGACCTGCATCCTGTAAATACCAGGGAGATGGTGTTTGACATATTATATATGCTCTTTAACCTGGGACTAACGTCATATCTCATTGGAAATATGACAAACTTGGTTGTTCACGGGACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGCTGCCACAGGTTTTGCCCATCGGAATCAGTTACCTATCCGCTTGCAAGAACAGATGCTGGCTCATTTGTTTATGAAGTACAGAACTGATTTAGAAGGATTGCAGCAACAAGAAATTATTGAATCCCTTCCAAAGGCTATTCGGTCTAGCATCTCACACTACCTATTCTTTTCACTTGTGGACAAAGTTTACTTGTTTCATGGAGTATCAAGTGACCTACTCTTTCAACtgGTCACGGAGATGAAGGCTGAGTATTTTCCTCCAAAGGATGATGTGATTTTGCAGAATGAAGCGCCAACAGACTTTTATATCTTTGTCACTGGTGCTGCAGAACTCATCATTAGAAGGAATGGAATGGAACAGGTCATTGGTGAGGCAGTGTCAGGAGATGTAGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAGACGTTTACAGTTCGAACCAAACGATTGAGCCAAATTCTGCGCTTGAACCGTACTACATTTTTAAATCTTCTTCATTCAAATGTTGGAGAAGGGACAATAGTCATGAACAATTTTCTCCAGCATTTGCAAGAATCAAGGTATCCAGGGATGGATGTTATTTTGGCAGAAACGGAGGCCATGCTTGCTCGGGGTAGAATGGATATGCCCATTACCACAGGCTTTGCAGCAACCAGAAATGATGATCTATTGTTACATCGTTTGCTTAAGAAGGGTTCAGATCCAAATGAAGTAGATAAGAATGGAAAGACTGCACTGCATGTTGCAGCTTCCAGAGGCAATGAGCATTGTGTAACTTTGCTTCTAGAATATGGTGCTGATCCCAATAGCAAAGATATGGACGGAAGTGTCCCACTATGGGAAGCAATGAAGGGTAGGCATGAATCTGTCATGAAACTTCTCATAGACAATGGTGCAGACATATCTTCCGCCGATGCAGGCCATCTAGCATGCACTGCTGTTGAGCAAAATAACATAGAATTGCTCAAGGAATTAATTCAATGTGGCTTGAATGTGACACAACCCAAAAGAATGGAACCACTGCTCTGCATACTGCAGTATTTGAAGGAAACACTGAGTTGA 2046 0.4384 MSTRAKKKFARLCCSHDETADDERHRNRIEIDQMSVDDGSQYSLNRVPLPSLGAAASCRRPKLRSFIVSPYNPRYRLWETFLVLLVFYTAWVCPFEFGFLNEPEDPLSITDNVVNAFFAIDIVLTFFVAYLDKASYLLVDQPKLLALRYARTWLAFDVISTIPSELARSVLPPPLKTYGYFNMLRLWRLRRVSAMFARLEKDRNYNYFWVRCLKLICVTLFSVHFAACFYYFLALKHEQKSTWLSLVSDNNQQNVWSRYVTSMYWSIVTLSTVGYGDLHPVNTREMVFDILYMLFNLGLTSYLIGNMTNLVVHGTSRTRKYRDTVQAATGFAHRNQLPIRLQEQMLAHLFMKYRTDLEGLQQQEIIESLPKAIRSSISHYLFFSLVDKVYLFHGVSSDLLFQLVTEMKAEYFPPKDDVILQNEAPTDFYIFVTGAAELIIRRNGMEQVIGEAVSGDVVGEIGVLCYRPQTFTVRTKRLSQILRLNRTTFLNLLHSNVGEGTIVMNNFLQHLQESRYPGMDVILAETEAMLARGRMDMPITTGFAATRNDDLLLHRLLKKGSDPNEVDKNGKTALHVAASRGNEHCVTLLLEYGADPNSKDMDGSVPLWEAMKGRHESVMKLLIDNGADISSADAGHLACTAVEQNNIELLKELIQCGLNVTQPKRMEPLLCILQYLKETLS 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3430 681 ProSiteProfiles Ankyrin repeat region circular profile. 602 633 - -
Ssu1g3430 681 SMART cnmp_10 391 508 IPR000595 -
Ssu1g3430 681 SUPERFAMILY cAMP-binding domain-like 316 511 IPR018490 -
Ssu1g3430 681 SMART ANK_2a 633 662 IPR002110 GO:0005515
Ssu1g3430 681 SMART ANK_2a 602 631 IPR002110 GO:0005515
Ssu1g3430 681 SMART ANK_2a 569 598 IPR002110 GO:0005515
Ssu1g3430 681 PRINTS Ankyrin repeat signature 618 632 IPR002110 GO:0005515
Ssu1g3430 681 PRINTS Ankyrin repeat signature 570 585 IPR002110 GO:0005515
Ssu1g3430 681 Pfam Ion transport protein 76 318 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu1g3430 681 Pfam Cyclic nucleotide-binding domain 411 496 IPR000595 -
Ssu1g3430 681 PRINTS EAG/ELK/ERG potassium channel family signature 303 312 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3430 681 PRINTS EAG/ELK/ERG potassium channel family signature 88 95 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3430 681 PRINTS EAG/ELK/ERG potassium channel family signature 122 131 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3430 681 PRINTS EAG/ELK/ERG potassium channel family signature 111 121 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3430 681 PRINTS EAG/ELK/ERG potassium channel family signature 259 276 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3430 681 PRINTS EAG/ELK/ERG potassium channel family signature 285 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3430 681 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
Ssu1g3430 681 ProSiteProfiles cAMP/cGMP binding motif profile. 391 510 IPR000595 -
Ssu1g3430 681 Gene3D - 76 312 - -
Ssu1g3430 681 Gene3D - 539 675 IPR036770 -
Ssu1g3430 681 ProSiteProfiles Ankyrin repeat region circular profile. 569 600 - -
Ssu1g3430 681 Pfam Ankyrin repeats (3 copies) 544 632 IPR002110 GO:0005515
Ssu1g3430 681 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
Ssu1g3430 681 PANTHER POTASSIUM CHANNEL AKT1 5 662 IPR045319 GO:0005249|GO:0006813
Ssu1g3430 681 Gene3D Jelly Rolls 356 525 IPR014710 -
Ssu1g3430 681 SUPERFAMILY Ankyrin repeat 543 664 IPR036770 -
Ssu1g3430 681 SUPERFAMILY Voltage-gated potassium channels 70 312 - -
Ssu1g3430 681 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 5 662 - -
Ssu1g3430 681 CDD CAP_ED 391 496 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3430 Ssu-Chr1 88056946 88063134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3430 40 661 Ion Channels AT4G32500 64.753 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3430 K21867 - gmx:100802964 1157.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3430 1 88056946 88063134 Ssu1g3430 1 88056946 88063134 ECH