Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3429 ATGCAAGATGCTAATGGGTGGACTCCCAGGACTTTAGCAGAACATCATGAGcaggaagaaattaaaaatatattccaGAACATTAGAGAGAGCAGAAAACCAGCTGTTATTCCAATATCAAAGAATGACAGGATTGGGGGGTTTCAAAGTGATCCCAGCATGCCTGCCATTTCCCAAGAAAGCATGCCACTGCCGCCTACTCAAGAGTTGACTTGGCTAGGTAATCATGGGAGAAGGTCTTCCAGCTCTTTTCATAATTCCATTTTTGGAATGATCTCAACTGCCAATCGTTATAAAAGAGATCGCAGGGCATCCGAAATCAGTAACACTAATATAGGGAATGTGAACGAATTAACCAGAGTGACACTTAGTTGTCCTGAAAAAGGTGAACAACATGCTAGAAAGCTTGTTTTGTTGCCCAAGTCCCTTGAAGAGCTGCTAGATATTGGTGCCAGAAAGTTCGGTATATCTCCCACCAAAATTTTGACCTCAGATGGGGCTGAAGTAGACGATATAAATCTCATAAGAGATGGTGATCATCTTATTATTGCCCGGGACTGA 561 0.41 MQDANGWTPRTLAEHHEQEEIKNIFQNIRESRKPAVIPISKNDRIGGFQSDPSMPAISQESMPLPPTQELTWLGNHGRRSSSSFHNSIFGMISTANRYKRDRRASEISNTNIGNVNELTRVTLSCPEKGEQHARKLVLLPKSLEELLDIGARKFGISPTKILTSDGAEVDDINLIRDGDHLIIARD 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3429 186 Pfam KHA, dimerisation domain of potassium ion channel 120 183 IPR021789 -
Ssu1g3429 186 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 1 185 - -
Ssu1g3429 186 PANTHER POTASSIUM CHANNEL AKT1 1 185 IPR045319 GO:0005249|GO:0006813
Ssu1g3429 186 ProSiteProfiles KHA domain profile. 120 186 IPR021789 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3429 Ssu-Chr1 88055909 88056910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3429 3 186 Ion Channels AT2G25600 42.188 4.21e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3429 K21867 - gmx:100786870 238.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0593 5 13468464 13475279 Ssu1g3429 1 88055909 88056910 PCT