Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3428 ATGGGAGCACCATTTAAGGGAATAATCCAAGATGTCAAGGGAAGAGCTCAATGCTATAAACAAGATTGGGTTTGTGCAATCTGTTCTGGCGTTAGCATATTGGCTCCAACTTTCTACATATTCTTTGCTTCTGCTCTTCCTGTCATTGCTTTTGGAGAGCAACTCAATAGGGATACAGATGGAAGATTGAGCACAGTGGAAACATTGGCATCTACTGCTATTTGTGGATTTAGTCACTCAATATTTGGCGGCCAACCTTTGTTGATTTTAGGAGTTGCTGAACCCACTGTCATAATGTACACTTATCTGTACAGTTTTTGCAAAAAAAGGCCAGAACTGGGTGACAAGCTCTTTCTGGCTTGGGCTGCTTGGGTTTGTGTTTGGACGGCATTCTTGTTGATTCTGCTTGCAATTTTTAATGCTTGCACAATTATCACAAGGTTTACAAGAATTGCAGGGGAGTTATTTGGCATGCTCATAActgttcttttctttcaagAGGCTATAAAGGGATTGATAGGCGAGTTCAACACGCCCAAGAATGAAAATCCTTCCTCAGTGGAATTTCAATTCCAGTGGCGGTACACAAATGGATTACTTGCagtcattttctcttttggacTACTTGTCACTGCCCTTAAAAGCAGAAAAGCACGAACGTGGCGATATGGAACAGGGTGGCTACGAGGATTTATAGCAGATTATGGGGTTCCGTTGATGGTAGTGCTATGGACTGCATTATCTTATGGTGTACCGGGCAAAGTTCCAGATGGTGTTCCTAGAAGGCTCGTTTCTCCCCTTCCCTGGGAACCTGCATCTCTCTATCACTGGACAGTAGTGAAGGATATGGGGAAGGTACCCTTGGTTTATATATTTGGGGCAATTATTCCTGCTCTCATGATAGCAGGCTTATACTTTTTCGATCACAGCGTAGCTTCGCAGATGGCGCAACAGAAAGAATTTAACCTTCAAAAACCATCTGCCTACCACTATGATGTTTTGCTGCTTGGAATAATGACTCTTATTTGCGGGATCCTTGGCCTTCCTCCCTCAAATGGAGTACTTCCACAGTCCCCCATGCATACAAAGAGTTTAGCAGTTCTTAGGAGGAGGTTGATCCGAAAGAAGGTGGTGAAGAGCGCCAAGGAATGTATTAAGCAACGAAGGACCAACTCTGAATTGTATGGAAAGATGCAAGCTGTGATTGTAGAAATGGATACAGACCCTACGGATAAAGAATTGGAGACTCTGAAGGAAGCTGTAATGAAATCCGATAACAAGGATGGTGCAAAGGAAAATTTTGATCCTGAGAAACACATAGATGAATATCTACCAGTCCGGGTTAATGAGCAAAGAATGACCAACCTATTGCAGTCTCTCCTGGTTGGTGTATCAATCTTAGCCATGTCTGTTATCAAAAGGATACCAACCTCAGTTCTATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGGAATCAGTTCTGGGAAAGGATATTGCTCCTCTTCATCACCCCAAGCCGGCGTTACAAAATTTTGGAAGGTTCTCATGCCTCTTTTGTGGAGACAGTACCATTCAAGACCATAGCTGCATTTACAGCATTACAGATAGCATATTTTCTGTTGTGTTTCGGGGTCACTTGGATACCTATAGGTGGAATATTGTTCCCGGTACCATTCTTCCTTCTCATAATTATAAGAGAACACTTGCTTCCAAAGCTATTCAAGCCTAGCCATCTTCAAGAACTAGATGCTTCTGAGTATGAGGAAATTGTTGGATCTCGTGCACTGAGGGATAAGGAGCCGCCTGATACTGATACGGAAGGAAGCTCGGAAGACTACTACGATGCAGAGATATTGGATGAGAGGACAACTAGCAGGGGAGAGTTGAAACTTAGAGCTGTAAGCAGCTTCAATGATAGAAACCACAGCTTCAGCGAAGACAGACACATTCAGGTAAATGACTTACATAGAATCCTTTAA 1989 0.4218 MGAPFKGIIQDVKGRAQCYKQDWVCAICSGVSILAPTFYIFFASALPVIAFGEQLNRDTDGRLSTVETLASTAICGFSHSIFGGQPLLILGVAEPTVIMYTYLYSFCKKRPELGDKLFLAWAAWVCVWTAFLLILLAIFNACTIITRFTRIAGELFGMLITVLFFQEAIKGLIGEFNTPKNENPSSVEFQFQWRYTNGLLAVIFSFGLLVTALKSRKARTWRYGTGWLRGFIADYGVPLMVVLWTALSYGVPGKVPDGVPRRLVSPLPWEPASLYHWTVVKDMGKVPLVYIFGAIIPALMIAGLYFFDHSVASQMAQQKEFNLQKPSAYHYDVLLLGIMTLICGILGLPPSNGVLPQSPMHTKSLAVLRRRLIRKKVVKSAKECIKQRRTNSELYGKMQAVIVEMDTDPTDKELETLKEAVMKSDNKDGAKENFDPEKHIDEYLPVRVNEQRMTNLLQSLLVGVSILAMSVIKRIPTSVLWGYFAYMAIDSLPGNQFWERILLLFITPSRRYKILEGSHASFVETVPFKTIAAFTALQIAYFLLCFGVTWIPIGGILFPVPFFLLIIIREHLLPKLFKPSHLQELDASEYEEIVGSRALRDKEPPDTDTEGSSEDYYDAEILDERTTSRGELKLRAVSSFNDRNHSFSEDRHIQVNDLHRIL 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3428 662 PANTHER ANION EXCHANGE PROTEIN 1 655 IPR003020 GO:0005452|GO:0006820|GO:0016020
Ssu1g3428 662 PANTHER BORON TRANSPORTER-LIKE PROTEIN 1 655 - -
Ssu1g3428 662 Pfam HCO3- transporter family 446 536 IPR011531 GO:0006820|GO:0016021
Ssu1g3428 662 Pfam HCO3- transporter family 4 179 IPR011531 GO:0006820|GO:0016021
Ssu1g3428 662 Pfam HCO3- transporter family 192 372 IPR011531 GO:0006820|GO:0016021
Ssu1g3428 662 Gene3D Helical hairpin bin 15 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3428 Ssu-Chr1 88049494 88052869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3428 3 653 Antiporters AT5G25430 67.674 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3428 K24194 - gmx:100787412 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3428 1 88049494 88052869 Ssu1g3428 1 88049494 88052869 ECH
Ssu1g3428 1 88049494 88052869 Ssu5g0594 5 13506434 13510451 ECH
Ssu5g0594 5 13506434 13510451 Ssu1g3428 1 88049494 88052869 PCT