Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3420 ATGGAAGAAACTGAAGGGGTGAATTGTTGCAGTGAAAGTGAAAGTAGGAGCTCTAGTGAGACTCGACCACCCAATCCCAACCCACCTTCGTATCGCCAATGCAAACTTGTTCGCCACGCTTCTCTTATGAAAACAAAGTTGTCTGATGTATCTTCTGGGCCGGGGCATGTTACTGAAGATTGTGAGTCTGATTTCTTTCCAGCGCTTCGTTCTGGAGCATGCGCTGATATGGGATTCCGGTCAAGTATGGAAGATGTATATGTTTGTGTCGACAATTTTATGCAGGATTATGGATTCAAGAACCATATAGATGGACCCAGTGCTTTCTATGGGGTATTTGACGGACATGGTGGAAAGCATGCTGCTGACTTTGCTTGCCTTAATCTGCCAAAGTTCATTTTCAAGTATGAAGATTTCCCTAGAGATATTGAAAGGATAGTTGCTTCAGCATTTCTGCAAACAGACAATGCCTTTGCAGAAGCTTGCTCTCTGGATGCTGCACTTGCATCTGGCACCACTGCATTAGCTACTCTTGTTATaggaagGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCCGTGCTGTGCCGTCGTGGAAAAGCAATTGAAATGTCAAGAGATCATAAACCAAGTTGCAACAAAGAGAAGAAGCGCATCGAGGCATCTGGGGGTTATGTTTACGATGGATATCTTAATGGACAACTTAATGTTGCTCGTGCACTCGGTGACTGGCACATGGAAGGAATGAAGAGCAAAGAAGGTGGACCGCTGACTGCAGAACCTGAACTTATGACTACAAAACTGACTGCCGAGGACGAATTTCTGATCATAGGCTGTGATGGGATTTGGGATGTATTTAGGAGCCAAAATGCTGTGGATTTTGCCCGGCGCAGGCTTCAGGAGCATAACGACCCGGCCATGTGTAGTAAGGATCTGGTTGATGAGGCTTTGAAGAGAAAAAGTGGAGACAATTTGGCTGCAGTTGTGGTTTGCTTCCAGCAGCAGCCTCCTCCTAACTTGGTGGCACCGCGCTCTAGAGTGCACCGAAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTTCTGGACAGCTTGGGTAATTGA 1110 0.4622 MEETEGVNCCSESESRSSSETRPPNPNPPSYRQCKLVRHASLMKTKLSDVSSGPGHVTEDCESDFFPALRSGACADMGFRSSMEDVYVCVDNFMQDYGFKNHIDGPSAFYGVFDGHGGKHAADFACLNLPKFIFKYEDFPRDIERIVASAFLQTDNAFAEACSLDAALASGTTALATLVIGRLLVVANAGDCRAVLCRRGKAIEMSRDHKPSCNKEKKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKSKEGGPLTAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPAMCSKDLVDEALKRKSGDNLAAVVVCFQQQPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLGN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3420 369 Gene3D - 54 337 IPR036457 -
Ssu1g3420 369 SMART PP2C_4 60 331 IPR001932 -
Ssu1g3420 369 PANTHER PROTEIN PHOSPHATASE 2C 60 355 IPR015655 GO:0004722|GO:0006470
Ssu1g3420 369 SUPERFAMILY PP2C-like 65 335 IPR036457 -
Ssu1g3420 369 Pfam Protein phosphatase 2C 71 325 IPR001932 -
Ssu1g3420 369 MobiDBLite consensus disorder prediction 1 31 - -
Ssu1g3420 369 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 60 355 - -
Ssu1g3420 369 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169
Ssu1g3420 369 ProSiteProfiles PPM-type phosphatase domain profile. 70 333 IPR001932 -
Ssu1g3420 369 CDD PP2Cc 70 333 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3420 Ssu-Chr1 87968712 87971298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3420 1 369 PP2C-type Phosphatase Gene Family AT2G25620 66.582 0.0 520
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3420 K14803 - gmx:100815725 687.182