Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3417 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTCTACATCCATGATTATCTTGTGAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAATGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACTAATGAGAAGCACTCAGAGGTTGCTGCTTCGTATATTGAGACACAATTAATAAAGGCGAGGGAGCAACAGCAACAGCAGCAGCCACAACCCCAGCAGTCAcagcatcaacaacaacaacagcagcaACAACACATGCAGATGCAACAGCTCCTTTTGCAGAGAGcacagcagcagcagcagcaacagcagcagcagcaacagcagcagcagcagcagcagcagcaacagcagcagcaacaacaacagcCACAACCACAGCAACAGCAGCCacaaacacaacaacagcaaagTAGGGATAGGGCTCATCTTTTAAATGGTAGTGCAAATGGGTTAGTTGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGTCAACTCTTGGACCCAAATCATGCATCGATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTTCACAAGTTCAAGCTCGTACTCAGCAATTACCAGGGTCTACTATGGATATAAAGGGTGAGATTAGCCCGGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCATTGATGGCAATGCCTGGATCAAATCAAGGTAGCAACAATTTGACTTTGAAAGGGTGGCCACTGACAGGTTTGGAGCAACTGCGCTCTGGTTTACTCCAGCAACAAAAACCTTTCATGCAGACTCCTCCGCCTTTCCATCAACTCCAAATGTTGACAACCCAACATCAGCAGCAGCTTATGCTGGCACAACAAAATTTGACGTCACCAACTGGCAGTGAAGATAGTAGAAGACTAAGAATGCTAATGAATAATAGGAGTATTGGTCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCAAATGTTGGATCCCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTACAGCAGCAACATCAACAACAGTCAAGTACCAATGCACAGCAGCAGCAACTTCAACAGCATGCCCTTTCAAATCAGCAATCTCAGACTTCTAATCATAGCATGCATCAGCAAGATAAGGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGGAGCATGTCAAACTCATTTAGAGGAAATGACCAGATTGGGAGAAAGAGAAAGCAGCCTGGATCCTCGTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACAACAGGTCCGTCACCAAGTTCAGCACCCTCAACTCCCTCGACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCAAAGCCTCTACTGATGTTTGGTACTGATGGCACTGGAACCCTTACGTCACCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTGCCTGTTGCCATTTCTCATCTGATGGGAAATTACTTGCAAGTGGTGGCCATGACAAAAAGGTTGTTTTATGGTACACGGATTCTCTAAAACAAAAAGCCACTCTTGAAGAGCATTCGTCTTTGATTACCGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGAAAATCCTGGTTATTCACTTCGCACCTTCACGGGACATTCTACAACTGTTATGTCGCTGGATTTTCATCCAAATAAAGATGACCTTATCTGCTCttgtgatggtgatggtgagaTAAGATATTGGAGCATAAACAATGGTAGTTGTGCTGGAGTCTCCAAGGGTGGCACCACCCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTTGCTGCAGCTGCAGAGAACATTGTGTCTATATTTGATGTGGAGACACAAGCGTGCCGATATTCATTGAAGGGACACAAAAAAACGGTAGATTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGATTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGCAATGGCAATAAGTTTCATGCATGTGTTTTCCATCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGACGGTCTTATTACTTCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCGGAAGTCATGACAAGTTCATCAAACTCTGGAAGTGATTATGTCTCCTCCAAGTGA 2709 0.4271 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQPQPQQSQHQQQQQQQQHMQMQQLLLQRAQQQQQQQQQQQQQQQQQQQQQQQQQQQPQPQQQQPQTQQQQSRDRAHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAPGQPSGQVLHGAAGGMSSQVQARTQQLPGSTMDIKGEISPVLNPRAAGPEGSLMAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQTPPPFHQLQMLTTQHQQQLMLAQQNLTSPTGSEDSRRLRMLMNNRSIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKLQQQHQQQSSTNAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGSMSNSFRGNDQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLLMFGTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVACCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVENPGYSLRTFTGHSTTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCAGVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQACRYSLKGHKKTVDCVCWDPSGELLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHACVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASEVMTSSSNSGSDYVSSK 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3417 902 MobiDBLite consensus disorder prediction 88 109 - -
Ssu1g3417 902 SMART Lish 8 40 IPR006594 GO:0005515
Ssu1g3417 902 MobiDBLite consensus disorder prediction 376 536 - -
Ssu1g3417 902 Pfam WD domain, G-beta repeat 651 686 IPR001680 GO:0005515
Ssu1g3417 902 Pfam WD domain, G-beta repeat 614 643 IPR001680 GO:0005515
Ssu1g3417 902 Pfam WD domain, G-beta repeat 775 809 IPR001680 GO:0005515
Ssu1g3417 902 Pfam WD domain, G-beta repeat 693 730 IPR001680 GO:0005515
Ssu1g3417 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 697 735 - -
Ssu1g3417 902 SMART WD40_4 647 686 IPR001680 GO:0005515
Ssu1g3417 902 SMART WD40_4 605 644 IPR001680 GO:0005515
Ssu1g3417 902 SMART WD40_4 772 810 IPR001680 GO:0005515
Ssu1g3417 902 SMART WD40_4 816 855 IPR001680 GO:0005515
Ssu1g3417 902 SMART WD40_4 690 730 IPR001680 GO:0005515
Ssu1g3417 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 697 739 IPR001680 GO:0005515
Ssu1g3417 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 612 643 - -
Ssu1g3417 902 ProSitePatterns Trp-Asp (WD) repeats signature. 673 687 IPR019775 -
Ssu1g3417 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 779 819 IPR001680 GO:0005515
Ssu1g3417 902 CDD WD40 612 885 - -
Ssu1g3417 902 Pfam LisH 10 36 IPR006594 GO:0005515
Ssu1g3417 902 Gene3D - 740 897 IPR015943 GO:0005515
Ssu1g3417 902 Gene3D - 590 739 IPR015943 GO:0005515
Ssu1g3417 902 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Ssu1g3417 902 MobiDBLite consensus disorder prediction 413 452 - -
Ssu1g3417 902 MobiDBLite consensus disorder prediction 463 518 - -
Ssu1g3417 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 654 689 IPR001680 GO:0005515
Ssu1g3417 902 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 886 IPR044716 GO:0003714
Ssu1g3417 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 654 689 - -
Ssu1g3417 902 Coils Coil 112 149 - -
Ssu1g3417 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 612 653 IPR001680 GO:0005515
Ssu1g3417 902 SUPERFAMILY WD40 repeat-like 610 885 IPR036322 GO:0005515
Ssu1g3417 902 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3417 Ssu-Chr1 87873529 87883418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3417 691 874 Miscellaneous Gene Families AT5G08390 22.751 1.04e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Ssu1g3417 WD40 7.6e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3417 - - gmx:100816263 1303.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0608 5 13873804 13895643 Ssu1g3417 1 87873529 87883418 PCT