Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3410 ATGGCGGTGCTGAGAATGGCTCAGCCTCACAATGGCAGCAGCAACAACAGTGCGAAACAGCAATTGGTCCTCCATGACTTTCTGGGCATGAAGCCCGCCGGCGATTCCCCCAAAACCGCCGACGTCAGGTTATCGGAGCCGTCGGCGTCCGCCTCCTCCGCCGGCGCACGCGGCCCCTTCTCCGCCACCTCCGACATCGCTTCCGAGAAACAGGTAGGAAATCATCTCGAGGGAGTTCCATTCTATGGCCCGAGGAGTGATTTTTCTGGCACCGAGATAAGTAACAGATTAGTGGGAAACAAGAGAAGTAATTCTGATTCCACTTTTATGGGTTCCTCCAGAGACGCCTTCCAAATGGTCCCTGATTCCTTTCCAAACTCACATTTGATGAAGGTCCTCCGGAATGCAGCTGGAGGAGAGAGGTCTAGAAGACCCAATGATGATGAAGTGTTACTTGGTATGCAGTCAATGAAGCCATCTTCTTCTCAGATATTTCAGCCTCCCACCAGCACTAAGATTGATGCCAATAAGTGGGAACGATCTATTCTCATGAATGTTGGCCCTTCGATGCAGCATCCACCCCGTGGGGGGCAATTGGCACCTTTTGTGCACCAAATGGCTTCAGGCAAGATTAGGGATACCAATGCTGGCCCTTCATTCATCTCTCAGTCAGCTGCTGATGAAGGATCTAGAACTGGAATCAAGGGCCCtggaattttaaattctataaacACAACTGCTACAGCCACTGAGAAAACTTCATCTGCAGTGCTGCTTGGTGGCAGCAGGCCAAAGCCCGTAACTAATATAATAGAATCATCCACACCTCCAAGTCAACACGGGCTAACTTCTGCCAGCCGCCAAATGACTATTTTTTACGGAGGCCAAGCTCATGTTTTTGATGATGTCCACCCTCATAAGGCTGATGTTATAATGGCTTTGGCTGGGTCAAATGGTGGATCTTGGTCCACTGCATTCTCGCCTAAATCTACTGCAAAGATGGTTAGTGATGGTAACTGGCACAGCGGAGAAAATGAAACAGGTGTAGTGAGTAATGTGGCATTCCCACAGGAGCTTCATGGGAAATTGTCTATTACTGGCAGTTCTAGCCATGCCATCGGGCCTGGTGATCGAGTAACTACTGCAGCAGGGGCACACCAAGGAAGCATTTTTGCTAAAGATACAAGAAATCCGGTCCAGCCAGATCCCAGTTCTGAGGGCAAAAGAGCACAGTGA 1236 0.4927 MAVLRMAQPHNGSSNNSAKQQLVLHDFLGMKPAGDSPKTADVRLSEPSASASSAGARGPFSATSDIASEKQVGNHLEGVPFYGPRSDFSGTEISNRLVGNKRSNSDSTFMGSSRDAFQMVPDSFPNSHLMKVLRNAAGGERSRRPNDDEVLLGMQSMKPSSSQIFQPPTSTKIDANKWERSILMNVGPSMQHPPRGGQLAPFVHQMASGKIRDTNAGPSFISQSAADEGSRTGIKGPGILNSINTTATATEKTSSAVLLGGSRPKPVTNIIESSTPPSQHGLTSASRQMTIFYGGQAHVFDDVHPHKADVIMALAGSNGGSWSTAFSPKSTAKMVSDGNWHSGENETGVVSNVAFPQELHGKLSITGSSSHAIGPGDRVTTAAGAHQGSIFAKDTRNPVQPDPSSEGKRAQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3410 411 Pfam tify domain 284 316 IPR010399 -
Ssu1g3410 411 PANTHER PROTEIN TIFY 8 54 410 - -
Ssu1g3410 411 MobiDBLite consensus disorder prediction 43 61 - -
Ssu1g3410 411 MobiDBLite consensus disorder prediction 29 61 - -
Ssu1g3410 411 MobiDBLite consensus disorder prediction 366 411 - -
Ssu1g3410 411 SMART tify_2 282 317 IPR010399 -
Ssu1g3410 411 ProSiteProfiles Tify domain profile. 282 317 IPR010399 -
Ssu1g3410 411 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 54 410 IPR040390 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3410 17 377 Tify Gene Family AT4G32570 40.000 6.71e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Ssu1g3410 tify 2.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3410 - - gmx:100819293 717.227