Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3407 ATGGATAAAGTAAACGCAGCTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCGAGGGCTAGAGCCTTGAGAGGGATTCCTCCCTACTCAAGACCCTCCTTCAAAAATGAGCAGAAAAACGTGCTTCGAGCAAATTCCAAAAGAGCAGCTTCTGAAAACAAAAGTACTTCTGTGGTTGTTCCTGCTGTTGTCCAGCATAAGGGAAGGGCAGTGCTTACAGATGTAACAAACATACGTGCAAAGTCGCATGATAAGTGTACTAAGGCATCAAAATTTCAGGCCAAAGGAGTTCGTACGAAGAAAAGCACAAAGCTAGCTTCAGGTGTTTCCACTGAAGTTTCAACTTCACAGGAGGATGTTAGAGCAAAGTTAGCTGAAGAATTATCCACAATAAGGATGGTAGAATCGAATGACACCATAAGAGAACGTGTTATAGCAGACACCAGACTTTCAATGCAAGATTCTGTGAAATCTGAACTCTTGAGCTCTCCAAACAAAGACATAGATATGATTTGTGAGAAGCTACGAGCCTCAGACTCCCTGGCTATTGTGGACATTGATTCAGAGTTAAAGGATCCTCAAGTTTGGAGTTCTTATGCGCCTGACATATACAACAATATTCGAGTCACAGAGCTTCAAAGGAAACCAGTCACCAACTACATGGATGAGTTGCAACAAGATATTAATCCAAGCATGCGCGGAATTCTGGTTGACTGGCTTGTGGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACTCTTTACCTGACAGTGAACCTCATTGATCAGTACCTCTCAACAAGATCCATTCAGAAGCAAAGGCTCCAGTTGCTCGGTGTCAGTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACACAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTAGATCTTATACATTTTCAGTTATCTGTTCCCACAATCAAAACATTTGTCAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGTGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATACAGCTTCTTCCAGTTTCTACCTTCCCTTGTAGCTGCATCTGCTGTGTTCCTTGCCAGATGGACCCTGAACGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAACTACAAAGCTTCAGAGCTCAAAACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAGGGCTGTTCCCTGAATGCTGTAcgagagaaatataaacaacaGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAACCTGTGCAGTCGCTCTTCCAGGTACCAAGTGTAAATGTTTTTGGCGGATGA 1422 0.4226 MDKVNAACAKDEERPLRITRARARALRGIPPYSRPSFKNEQKNVLRANSKRAASENKSTSVVVPAVVQHKGRAVLTDVTNIRAKSHDKCTKASKFQAKGVRTKKSTKLASGVSTEVSTSQEDVRAKLAEELSTIRMVESNDTIRERVIADTRLSMQDSVKSELLSSPNKDIDMICEKLRASDSLAIVDIDSELKDPQVWSSYAPDIYNNIRVTELQRKPVTNYMDELQQDINPSMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDQYLSTRSIQKQRLQLLGVSCMLIASKYEEICAPRVEEFCFITDNTYTKEEVLKMEREVLDLIHFQLSVPTIKTFVRRFIQAAQSSYKAPCVELEFLANYLAELALVEYSFFQFLPSLVAASAVFLARWTLNESEHPWNPTLEHYTNYKASELKTVVLALQDLQLNTKGCSLNAVREKYKQQKFNCVANLSPKPVQSLFQVPSVNVFGG 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3407 473 SMART cyclin_7 241 325 IPR013763 -
Ssu1g3407 473 SMART cyclin_7 338 426 IPR013763 -
Ssu1g3407 473 CDD CYCLIN 235 324 IPR013763 -
Ssu1g3407 473 PANTHER CYCLINS 50 463 IPR039361 -
Ssu1g3407 473 PIRSF Cyclin_A_B_D_E 28 468 IPR039361 -
Ssu1g3407 473 Gene3D - 205 453 - -
Ssu1g3407 473 SMART Cyclin_C_2 334 457 IPR004367 -
Ssu1g3407 473 PANTHER CYCLIN-A2-4 50 463 - -
Ssu1g3407 473 SUPERFAMILY Cyclin-like 194 331 IPR036915 -
Ssu1g3407 473 SUPERFAMILY Cyclin-like 333 456 IPR036915 -
Ssu1g3407 473 CDD CYCLIN 332 424 IPR013763 -
Ssu1g3407 473 Gene3D - 219 332 - -
Ssu1g3407 473 Pfam Cyclin, C-terminal domain 334 456 IPR004367 -
Ssu1g3407 473 Pfam Cyclin, N-terminal domain 205 331 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3407 Ssu-Chr1 87682431 87687243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3407 7 463 Core Cell Cycle Gene Families AT5G25380 52.402 2.20e-156 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3407 K06627 - gmx:547780 782.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0613 5 14146900 14153045 Ssu1g3407 1 87682431 87687243 PCT