Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3405 ATGGACTTTGTCTCACCACAGCTACATTCTGATGGTCCATTTGACACTTACCCCTTGTTGATGGCGCGCCCTACTCACCATGTCATTGACATCGCGGGGAGTTCTGGACCTtccacttcttcttcttcctctccccATGATACACGTGCCAATGATGTAGATTTTGGTGCTTTGAATTCTAGGATTAGGCGGCGAGGGGATAATACGCGTAGGCATAGGAGTCCGTTGAATTCAGGGTTATGGATATGTGTTGAGTTAGTGATCACGGCGAGCCAGATTGTCGCGGCTGTTCTTGTTCTGTCTTTGTCAAAGCACGAGCATCCGCGTGCCCCGTTGTTTGCGTGGGTTGTTGGGTATGCGTCCGGGTGTGTTGCTACCCTCCCTCTGCTGTATTGGCGATATTATCACAATTGCCGTGTTCGGGAGCAAGAGTCATCTCAGACCTCTCCTCGGAGTAATGATCCTTCGGGGACACTTCTTTCCAATTCCACGACAAATGGAGGGGAAGATGTTCGGGCGTCCTCCAGAAGCAATCTAGACTCGTTGTGGTTGATGAATGCAAGATTGAAGCTACTTGTGGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTGTTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTGCTGAAGCACCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGTATCGGTTATGCTATGCCCTTCATTCTATGTGCAACAATTTGCTGCTGTCTGCCTTGTATAATTTCCATCCTTGGGGTTAGAGAGGATATGACACAAACCCAAGGTGCATCCTCTGAATCGATCAATGCTCTGCCAACTTATAAgttcaaaatgaagaaaaataatagcaaagAGGAAAGCAACTCAACTGTTGGTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAGGAACGTTTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTACGAAAATAACGATGAGCTGAGAGAATTGCCTTGTTCTCATCTTTTTCACAAAGACTGTGTTGACAAGTGGTTGAAGATAAATGCTTCATGCCCCCTTTGCAAGAGCGAGGTTGGTGAGAACGTAACTGGATCAGTCTCTGGGGAAGATGCCAACCAACATCAGGGTGAAAGCAGGGTTGAGAATGGCCCCACCAATACCTCATCGTAG 1209 0.4442 MDFVSPQLHSDGPFDTYPLLMARPTHHVIDIAGSSGPSTSSSSSPHDTRANDVDFGALNSRIRRRGDNTRRHRSPLNSGLWICVELVITASQIVAAVLVLSLSKHEHPRAPLFAWVVGYASGCVATLPLLYWRYYHNCRVREQESSQTSPRSNDPSGTLLSNSTTNGGEDVRASSRSNLDSLWLMNARLKLLVEYFKIAVDCFFAIWFVVGNVWIFGGHSSAAEAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDMTQTQGASSESINALPTYKFKMKKNNSKEESNSTVGEGGVVAAGTEKERLISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINASCPLCKSEVGENVTGSVSGEDANQHQGESRVENGPTNTSS 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3405 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 376 IPR013083 -
Ssu1g3405 402 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Ssu1g3405 402 SMART ring_2 327 367 IPR001841 -
Ssu1g3405 402 MobiDBLite consensus disorder prediction 144 173 - -
Ssu1g3405 402 MobiDBLite consensus disorder prediction 375 402 - -
Ssu1g3405 402 CDD RING-H2_RNF111_like 326 368 - -
Ssu1g3405 402 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 59 394 - -
Ssu1g3405 402 SUPERFAMILY RING/U-box 318 374 - -
Ssu1g3405 402 MobiDBLite consensus disorder prediction 31 55 - -
Ssu1g3405 402 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 59 394 - -
Ssu1g3405 402 MobiDBLite consensus disorder prediction 32 49 - -
Ssu1g3405 402 Pfam Ring finger domain 327 368 IPR001841 -
Ssu1g3405 402 SMART ringv_2 326 368 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3405 Ssu-Chr1 87655224 87658306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3405 64 378 C3H Transcription Factor Family AT1G80400 60.802 9.47e-143 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3405 - - gmx:100795904 683.715