Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3403 atgggTTTGGATTACTACAATGTATTGAAGGTTAATAGAAATGCTACGGAGGATGATCTGAAGAAAGCATATAGAAGGTTGGCCATGAAATGGCACCCTGACAAGAACCCCACCAACAAAAGAGAAGCTGAAGCCAAATTCAAACAGATCTCTGAGGCTTACGAGGCAAGAAACCTTTCCCGTCGTTTTCCTTTAATGTCTGTACTAAGCGATCCTCAGAAGAGGGTGGTTTATGATCAGTATGGAGAGGAAGGGTTGAAAGATAGGCCACCGCCAGGTAATGAACCATCATCAAGTGGGTTTAATCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCTGGGCCAGGGAGGTCCAAGAGATTCCCGTCCGATGGAGGGGCAACAACATTTGGTGGATTTAGTGCAACTGACAACAATTTTGGAACACATAGTACAGGACGGGCGAATATGCCAAAGAAGTCACAACCTGTTGAGACCAAACTGCCTTGCAGTTTGGAGGAGTTATACACTGGATCTACAAGGAAAATGAAGATCACAAGGAGAATCGTGGACGCTAACGGACGGGCAATTCCAGAAACAGAGATACTAACCATTGATGTGAAGCCGGGTTGGAAGAAAGGGACAAAGATTACTTTCCCAGAGAAAGGGAATCAGCAACAGAATCAACTGGCAGCAGACCTTGTATTTGTTATTGATGAGAAGCCTCATGATTTGTTCAAGAGAGATGGCAACGACCTCATTGTGAGCAAAAGGGTGTCACTAGCAGAGGCCATTGGAGGAACCACAATAAATCTCACCGCACTTGATGGACGTAGTTTAAGTGTGCCAGTGACTGACGTTGTGAGCCCTGGTTACGAGATGAGTGTTGCAAATGAAGGGATGCCAATAACAAAAGAGCCTGGTCATAGGGGTGATTTGAGGATCAAATTTGACGTAAAGTTTCCAACAAGGTTGACCACAGAGCAACGAGCAGGACTCAAGCGAGCACTGGCAGGTTGA 1032 0.4486 MGLDYYNVLKVNRNATEDDLKKAYRRLAMKWHPDKNPTNKREAEAKFKQISEAYEARNLSRRFPLMSVLSDPQKRVVYDQYGEEGLKDRPPPGNEPSSSGFNPRNAEDIFAEFFGSSPFGFGSSGPGRSKRFPSDGGATTFGGFSATDNNFGTHSTGRANMPKKSQPVETKLPCSLEELYTGSTRKMKITRRIVDANGRAIPETEILTIDVKPGWKKGTKITFPEKGNQQQNQLAADLVFVIDEKPHDLFKRDGNDLIVSKRVSLAEAIGGTTINLTALDGRSLSVPVTDVVSPGYEMSVANEGMPITKEPGHRGDLRIKFDVKFPTRLTTEQRAGLKRALAG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3403 343 CDD DnaJ_C 166 329 - -
Ssu1g3403 343 MobiDBLite consensus disorder prediction 122 169 - -
Ssu1g3403 343 MobiDBLite consensus disorder prediction 82 104 - -
Ssu1g3403 343 SUPERFAMILY Chaperone J-domain 4 123 IPR036869 -
Ssu1g3403 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 335 IPR008971 GO:0006457|GO:0051082
Ssu1g3403 343 SUPERFAMILY HSP40/DnaJ peptide-binding domain 167 248 IPR008971 GO:0006457|GO:0051082
Ssu1g3403 343 SMART dnaj_3 3 74 IPR001623 -
Ssu1g3403 343 Gene3D - 246 342 - -
Ssu1g3403 343 ProSiteProfiles dnaJ domain profile. 4 82 IPR001623 -
Ssu1g3403 343 Pfam DnaJ domain 4 55 IPR001623 -
Ssu1g3403 343 Gene3D - 166 245 - -
Ssu1g3403 343 CDD DnaJ 4 71 IPR001623 -
Ssu1g3403 343 Pfam DnaJ C terminal domain 168 326 IPR002939 -
Ssu1g3403 343 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 343 - -
Ssu1g3403 343 MobiDBLite consensus disorder prediction 140 163 - -
Ssu1g3403 343 PRINTS DnaJ domain signature 6 24 IPR001623 -
Ssu1g3403 343 PRINTS DnaJ domain signature 74 93 IPR001623 -
Ssu1g3403 343 PRINTS DnaJ domain signature 42 62 IPR001623 -
Ssu1g3403 343 PRINTS DnaJ domain signature 24 39 IPR001623 -
Ssu1g3403 343 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 343 - -
Ssu1g3403 343 Gene3D DnaJ domain 3 124 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3403 Ssu-Chr1 87641548 87643733 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3403 5 81 C2H2 Transcription Factor Family AT1G74250 34.568 7.72e-08 52.0