Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3398 ATGCACACCAAATCGGCGCAGTCATCGTTTCGGGATCGCACGCAGGAATTCCAGAGCATTGCGGAGAGGTTGAAGAAGACAGGATCAGCGCCAAATGGACAAAGCAGCAGCTCATCCAGATCGGAGGAACAGCGATCCGCTATCGCCAATCAATCGGAGTTCAATAGAAGAGCTTCCAAGATCGGCTTCGGGATTCACCAAACGTCTCAGAAACTCGCCAAGCTCGCCAAGTTGGCTAAGAGGACTTCGGTTTTTGATGACCCTACCTTGGAAATCCAAGAGCTCACGGGGGTTATAAAGCAAGATATTACTGCTCTAAACTCTGCGGTTGTGGATCTTCAGTTGCTCTGCAACTCCAGGAACGAGAGTGGGAACGCTTCCACCGACACGACTAGCCATTCAACCACGGTTGTGGATGACCTGAAGACCCGGTTGATGAGCACCACCAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGAAGACAGCTGTTTTCGTCCTCTGCTTCTAAGGATTCCGCGAATCCTTTTGTCCGGCAACGGCCATTAGCTACAAGGGCGGCTGCTAGTACTTCTAATACCCCCGCTCCACCATGGGCTACCGGGTCATCTTCATCTCAGTTGTTTCCTAAGAAGCAGGTGGATGGGGAGAGTCAACCATTGCTGCAACAGCAACAGCAGCAGGAGGTAGTTCCATTGCAAGACAGTTACATGCAGAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAACTCAGCAACATCTTTAATCAACTAGCAACGCTTGTTTCCCAACAAGGAGAGATTGCCATCagGATTGATGAAAATATGGATGATACATTGGCAAACGTAGAGGGGGCGCAAGGGGCTTTGTTGAAGTATCTGAATAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTctttagagaaaaaatccATATTTATCACCGTAAAAAAAATATCCGTTTTATCggtctattttattattaa 1029 0.4577 MHTKSAQSSFRDRTQEFQSIAERLKKTGSAPNGQSSSSSRSEEQRSAIANQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTLEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNASTDTTSHSTTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSSASKDSANPFVRQRPLATRAAASTSNTPAPPWATGSSSSQLFPKKQVDGESQPLLQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFREKIHIYHRKKNIRFIGLFYY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3398 342 Pfam SNARE domain 279 320 IPR000727 -
Ssu1g3398 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 27 IPR021538 -
Ssu1g3398 342 MobiDBLite consensus disorder prediction 1 48 - -
Ssu1g3398 342 PANTHER SYNTAXIN-32-LIKE 2 320 - -
Ssu1g3398 342 SUPERFAMILY t-snare proteins 51 298 IPR010989 GO:0016020|GO:0016192
Ssu1g3398 342 MobiDBLite consensus disorder prediction 193 235 - -
Ssu1g3398 342 PANTHER SYNTAXIN 2 320 IPR045242 -
Ssu1g3398 342 CDD SNARE_syntaxin5 246 321 - -
Ssu1g3398 342 SMART tSNARE_6 238 305 IPR000727 -
Ssu1g3398 342 ProSitePatterns Syntaxin / epimorphin family signature. 249 288 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu1g3398 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 243 305 IPR000727 -
Ssu1g3398 342 MobiDBLite consensus disorder prediction 28 48 - -
Ssu1g3398 342 Gene3D - 47 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3398 Ssu-Chr1 87563834 87586949 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3398 1 321 SNARE and Associated Proteins AT3G24350 64.470 5.75e-138 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3398 K08490 - gmx:100777961 545.043