Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3397 ATGCACGTGCAATCGGCGCAGTCATCGTTCCGGGATCGGACGCAGGAATTCCACAGCATCACCGAGGGGTTGAAGAAGTCCGGATCAGGGCCCAATGGGCCCAGCAGCAGCAGTTCGTCCAGATCGGAGGAGCAGCGATCCGCGATCGCGAGCCAATCGGAGTTCAACAGAAGGGCGTCCAAAATCGGCTACGGGATCCACCAAACGTCTCAGAAGCTCGCCAAGCTCGCCAAGTTGGCGAAAAGGACTTCGGTCTTCGACGACCCTACTATGGAAATCCAAGAGCTCACGGGGGTTATCAAGCAGGATATCACTGCTCTGAACTCTGCGGTGGTGGATCTTCAGTTGCTATGCAACTCTAGAAACGAGAGCGGGAACGTTTCTGCCGACACCACGAGCCATTCGAGCACTGTGGTGGATGACTTGAAGACGCGGTTGATGAGCGCCACCAAGGAGTTTAAGGATGTTCTCACCATGCGAACTGAGAACATGAAAGTGCATGAGAATAGAAGACAGTTGTTTTCCTCTTCTGCTTCTAAGGATTCTGCAAATCCTTTTATTCGTCAACGGCCGTTGGTTGCAAGGGCGGCGGCTGGTACTTCGAATGCTCCTGCGCCTCCGTGGGCTAACGGGTCACCATCTTCGTCTCAGGTGTTTCCTAAGAAGCAAGTGGATGGGGAGAGTCAACCATtgttacaacaacaacagcagcaGCAGGAGGTAGTTCCATTGCAAGACAGTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAATCCACTATTCATGAGCTTAGCAACATTTTTAATCAGCTAGCGACACTTGTTTCCCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAGGGGGCACAAGGGGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGTTGATgatcaaaattttctttgtactaatatttttccttatggttttcttgttttttgtgGCATAG 1017 0.471 MHVQSAQSSFRDRTQEFHSITEGLKKSGSGPNGPSSSSSSRSEEQRSAIASQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNESGNVSADTTSHSSTVVDDLKTRLMSATKEFKDVLTMRTENMKVHENRRQLFSSSASKDSANPFIRQRPLVARAAAGTSNAPAPPWANGSPSSSQVFPKKQVDGESQPLLQQQQQQQEVVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3397 338 ProSitePatterns Syntaxin / epimorphin family signature. 252 291 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu1g3397 338 CDD SNARE_syntaxin5 249 327 - -
Ssu1g3397 338 Gene3D - 48 301 - -
Ssu1g3397 338 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 246 308 IPR000727 -
Ssu1g3397 338 SUPERFAMILY t-snare proteins 52 301 IPR010989 GO:0016020|GO:0016192
Ssu1g3397 338 SMART tSNARE_6 241 308 IPR000727 -
Ssu1g3397 338 MobiDBLite consensus disorder prediction 197 234 - -
Ssu1g3397 338 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 20 IPR021538 -
Ssu1g3397 338 PANTHER SYNTAXIN-32-LIKE 2 337 - -
Ssu1g3397 338 MobiDBLite consensus disorder prediction 1 54 - -
Ssu1g3397 338 MobiDBLite consensus disorder prediction 205 234 - -
Ssu1g3397 338 PANTHER SYNTAXIN 2 337 IPR045242 -
Ssu1g3397 338 MobiDBLite consensus disorder prediction 21 54 - -
Ssu1g3397 338 Pfam SNARE domain 282 334 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3397 Ssu-Chr1 87546536 87551378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3397 1 338 SNARE and Associated Proteins AT3G24350 64.305 7.50e-147 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3397 K08490 - gmx:100811494 526.554