Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3396 ATGACATCATTTAGGAAGCGCTTCCTTCGTGGGAACCATAAGTACAATGAGGCTACGAGGACTCTAGTTGTGCTCAAGGTTGGGCATTGGCTTGTTACAACATTGGGACATGTCAGGGTGTTTGTGAAGACTGTGCAAGATAAACCTCGAGCTGCTGAGTGGGCACCTAAGAGGCAAATGGTGCATTTCATAAGTAGAGGATTTGAttgtttaattttggttttagatgattcaaattttttgaagATGTTAAGAAGGGTCAGGGAGGACAATTTAGGAACTGTTGTTGTTAAGGATTGGGATATGGCATTGAGGCACTATGCTAATTTGTGGGTTCCTCGGATTGGGGTTAAGAATGGAGAGGTTGATTTGGTGCCTAATAAAAGAGGGAAGATAAGAACACAGGGAATAGAAGATGAGTTGTTTTAA 429 0.3939 MTSFRKRFLRGNHKYNEATRTLVVLKVGHWLVTTLGHVRVFVKTVQDKPRAAEWAPKRQMVHFISRGFDCLILVLDDSNFLKMLRRVREDNLGTVVVKDWDMALRHYANLWVPRIGVKNGEVDLVPNKRGKIRTQGIEDELF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3396 142 PANTHER - 3 124 - -
Ssu1g3396 142 PANTHER OS06G0166200 PROTEIN 3 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3396 Ssu-Chr1 87502879 87503307 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3396 4 142 C2H2 Transcription Factor Family AT5G52010 50.685 2.58e-42 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3396 - - pvu:PHAVU_001G023900g 167.933