Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3391 ATGCTAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTTGAATGCAATGATATGAAGCATGTGACTGAGAAAGATGTGTATAATCTACCATCAAATGAAGAGCACATCATTGGAGAAGAATCAAGTCAATCAACAAATCACAAAAAGGTCAATGATTTGCAAGAGAGAGGATATATGGAGTATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCTTGTTGCAATGAGATTTTTGATTGCCGCCACTGTCACAATGAGGCAAAAAATAGTATCAACATTGATAAGAAGCATAGACACGATATTCCCCGCCATCAAGTTAAACAGGTGATATGTTCACTTTGTGGGACCGAACAAGAGGTTCAGCAAAACTGTGTTAAATGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGTCGTGTAAACTCTTTGATGATGATGTATCTAAGCAGCAGTATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCTACAAATGtgGTTGTTGCTATTCAACTCTGCTGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCATTTGTTTTGAGTATTTGTTTGAATCTGTGAATGATGTCACTGTTTTGCTCTGTGGACATACAATACACAAGAGCTGCCTGAAGGAAATGAGGGAACATTTCCTGTATGTATGCCCTCTCTGCTCGAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATGCCTGAAccatatcaaaacaaaatgGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCACGTCCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAGTCCTACAACACACGAATAACAAGAGGCTGA 930 0.4065 MLEVAVMHSEPLQFECNDMKHVTEKDVYNLPSNEEHIIGEESSQSTNHKKVNDLQERGYMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNSINIDKKHRHDIPRHQVKQVICSLCGTEQEVQQNCVKCGVCMGKYFCGSCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCYKCGCCYSTLLKNSHPCVEGAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHFLYVCPLCSKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKTSHVQFHLVAQKCLNCKSYNTRITRG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3391 309 SUPERFAMILY RING/U-box 199 248 - -
Ssu1g3391 309 Pfam Ring finger domain 199 242 IPR001841 -
Ssu1g3391 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Ssu1g3391 309 Gene3D - 271 309 - -
Ssu1g3391 309 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 23 309 - -
Ssu1g3391 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 23 309 - -
Ssu1g3391 309 SMART ring_2 200 242 IPR001841 -
Ssu1g3391 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Ssu1g3391 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Ssu1g3391 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 262 IPR013083 -
Ssu1g3391 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Ssu1g3391 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Ssu1g3391 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Ssu1g3391 309 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3391 Ssu-Chr1 87446765 87449738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3391 62 309 C2H2 Transcription Factor Family AT3G18290 40.157 1.41e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3391 K10144 - gmx:100812023 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0631 5 14848466 14852152 Ssu1g3391 1 87446765 87449738 PCT