Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3383 ATGGTTGCACAAGGTCAGCAATTGGCGTCTTCCCAAACATCTAATGGTCCTCCCTCAGAGGTTAGAGATAGAAATGCTGAACGTAATGTCTCGGATCGAGCTGTTCACTCTACCAGCCAGATTGAACCTAGGGAGAGGAATGGGGAGTCCAATGCTGTAGATCGAGGCAATGCTGCAGGATTAAGTACGCAGCCTGTTAATAGTATTCCACAAACTCCTGTTGCTTCTGCAACTTCAGGATTGGTTGGCGACCGAAGAATATCTTTGGGTGCAGGAGCAGGTTGTGCCGGCCTTGCTGCACAATTGGAACAAGGATATCGTCAGGCAAGAGAGGCTGTCCGCTCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAGCCGCGCATATATTCACCTCCTGCCACTCTGGACTGTCTTCGTGCTCTAGCATGTCGAGTCCTGCTTGGATTAGCCAGAGATGATACTATTGCACACATATTGACAAAGCTTCAGGTAGGGAAAAAGCTGTCAGAACTGATTCGGGATTCAGGCAGCCAAACACATGGAACAGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCAATTGAGCTAATCGGGATTGTGACTAATTCAGGGCGTGCAAGTACATTAGCAGCTACTGATGCAGCTACTCCTACTTTAAGGCGCATAGAAAGAGCTGCTATAGCTGCTGCCACTCCTATTACTTACCATtcaagGGAACTCCTGCTCCTAATTCATGAACACCTACAGGCATCTGGATTGGCACAAACTGCTTCTGCATTGCTTAAAGAGGCTCAGTTGACTCCCTTGCCATCATTGGTTGCTCCATCTTCTCTTGCACAACAGCCCACCACACAGGAAGCTTCTTCAACACAAATTCAATGGCCCTCTGGTCGTACTCCTTCTGGATTTCTCACTAACAAATTGAAGTTTAATGCAAAGGATGAGGATGCCAGCTTGAAAAGTGATTCTGTCTCCGCGAAGAAAAAATCACTGACTTTCTCATCATCTTTTCATTCAAGACTTCAACAGGTCGACTCTCAGCAATCATCGGTCAGGAAATGGTCAAGTACTGGTAAAGAGTCTTCAGAAACTAGTGTAGTAGAGACTACGTCCGAATCTTCAGTGAAACATAACATTGATACTGGATCTCAGTATAAGACTCCTATTACCATACCAGCAAAGCGTAAGTTATCTGATTTGAAGGATATAGCAATGTTTTCATCATCTGGAAAACGACTAAATATTGGGGATCAAGGACTTCGCTCTCCTATTTGTTCAAGTACAATTCGTAAAAGCAGCCTGCAGACTGATGCTGTTGGGCTTTGCACACCAACTTGTAACCTGAGAAATCAACAGGGCCGTTGTATGGGTGACTTTGTGGATGAGAATCAGTATAGTATTCCAAATCTAGGCCAGATGACACCATCCTCCCAATTACTAAATGACCTTCAGCCCAACAACCCTGAGCGTGTAACATTAGATTCTTTAGTGGTTCAGTATCTGAAGCATCAGCATCGCCAATGCCCTGCTCCTATTACCACTCTTCCTCCACTGTCTCTTCTGCACCCACATGTCTGTCCTGAACCAAAGCGAAGCCTTGATGCCCCTTCTAATGTGACTGCCCGGCTTGGTACACgggaatttaaatatatgtatggGGGAGTACATGGGAATCGCAGGGATCGTCAATTTGTTTACAGTCGGTTTAGGCCGTGGCGCACTTGTCGGGATGATGCCGGTGCCTTGTTAACATGCATTACATTTGTTGGGGACTCTTCTCATATTGCTGTTGGTAGCCATAATGGAGAGCTCAAATTTTTTGACTCTAACAACAGCAATGTGGTGGAGAGCTTCACAGGTCACCAGTCTCCTTTGACTCTTGTTCAGTCTTTTGTTTCTGGTGAGACCCAGCTACTGCTTTCTTCAAGCTCCCAAGATGTTAGGTTGTGGGATGCAACATCAATTTTAGGTGGTCCTAGCCATTCATTTGAAGGATGCAAGGCTGCCAGGTTTAGCAATTCTGGGAATGTTTTTGCAGCCTTGTCGTCAGAATCTGCACGGCGGGAAATCCTCTTATATGATATCCACACATGTCAGTTAGAGTCGAGGTTGTCAGATACATTTGCAACTTCTACAGGGCGAGGTcatgtttattctttaatccATTTTAACCCTTCTGACTCAATGTTGCTTTGGAATGGTGTCTTGTGGGACCGGCGGGTTTCTGGACCTGTTCATCGCTTTGATCAGTTCACAGACTACGGTGGTGGAGGCTTCCATCCTGCTGGCAACGAGgttattATAAACTCTGAGGTTTGGGATCTGCGCAAGTTCAGACTCCTACGCAGTGTACCTTCATTAGATCAGACATCAATAACATTCAATGCACGTGGTGACGTAATGTACGCCATCTTAAGGAGAAATCTTGAGGACGTAATGTCAGCAGTCCACACTCGTCGTGTCAAGCATCCTCTTTTTGCAGCTTTCCGCACAGTGGATGCAATCAATTATTCTGACATTGCTACCATCCCTGTTGACCGCTGTGTTCTTGATTTTGCAACTGAGCCAACAGATTCATTTGTTGGGCTGGTTACTATGGATGATCAGGATGAGATGTATGCTTCTGCCAGAATTTATGAAATTGGTCGTCGGAGGCCAACTGATGATGATTCTGATCCTGATGATGCTGACAGTGAGGAGGAAGatgaggatgatgatgatgatgctgATGTAGATCCTCTTTTAGGCCCCGGTCTTGGCGGGGATAGTGGAAGTGATGCTGATGACATGAGCAATGACGACGACGACGATAGTGTGAGTGAGcttgatgaagatgaagatggagATTTCATTTTGGATGATGTAGACTTTGATGGAGGACCTGGCATATTGGAGATTGTGACAGAAGGGGATGAGGATGATGATGATAGTCAGGTACTAGAATCGTTGAGTAGTGACGATGAGGATTTTGTGGGTAATGGCtttggttattaa 3006 0.4438 MVAQGQQLASSQTSNGPPSEVRDRNAERNVSDRAVHSTSQIEPRERNGESNAVDRGNAAGLSTQPVNSIPQTPVASATSGLVGDRRISLGAGAGCAGLAAQLEQGYRQAREAVRSNNGIKVLLHLLQPRIYSPPATLDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTHGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLAQTASALLKEAQLTPLPSLVAPSSLAQQPTTQEASSTQIQWPSGRTPSGFLTNKLKFNAKDEDASLKSDSVSAKKKSLTFSSSFHSRLQQVDSQQSSVRKWSSTGKESSETSVVETTSESSVKHNIDTGSQYKTPITIPAKRKLSDLKDIAMFSSSGKRLNIGDQGLRSPICSSTIRKSSLQTDAVGLCTPTCNLRNQQGRCMGDFVDENQYSIPNLGQMTPSSQLLNDLQPNNPERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKYMYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFDSNNSNVVESFTGHQSPLTLVQSFVSGETQLLLSSSSQDVRLWDATSILGGPSHSFEGCKAARFSNSGNVFAALSSESARREILLYDIHTCQLESRLSDTFATSTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFAAFRTVDAINYSDIATIPVDRCVLDFATEPTDSFVGLVTMDDQDEMYASARIYEIGRRRPTDDDSDPDDADSEEEDEDDDDDADVDPLLGPGLGGDSGSDADDMSNDDDDDSVSELDEDEDGDFILDDVDFDGGPGILEIVTEGDEDDDDSQVLESLSSDDEDFVGNGFGY 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 56 77 - -
Ssu1g3383 1001 SMART WD40_4 615 655 IPR001680 GO:0005515
Ssu1g3383 1001 SMART WD40_4 660 698 IPR001680 GO:0005515
Ssu1g3383 1001 SMART WD40_4 572 612 IPR001680 GO:0005515
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 931 958 - -
Ssu1g3383 1001 SUPERFAMILY WD40 repeat-like 574 804 IPR036322 GO:0005515
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 882 1001 - -
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 1 77 - -
Ssu1g3383 1001 ProSiteProfiles LIS1 homology (LisH) motif profile. 240 272 IPR006594 GO:0005515
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 971 987 - -
Ssu1g3383 1001 Gene3D - 573 897 IPR015943 GO:0005515
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 280 304 - -
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 896 916 - -
Ssu1g3383 1001 PANTHER VPRBP PROTEIN-RELATED 2 980 IPR033270 GO:0016567
Ssu1g3383 1001 MobiDBLite consensus disorder prediction 352 383 - -
Ssu1g3383 1001 SMART Lish 240 272 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3383 Ssu-Chr1 87277167 87282821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3383 599 805 U-box Gene Family AT2G33340 25.000 4.41e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3383 K11789 - gmx:100796030 1616.28