Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3370 ATGAGCGGTATCAGCCTTGAGGACATCAAAAACGAAAACGTCGATCTGGAACGAATTCCAGTAGAGGAAGTGTTTGAGCAGCTGAAATGTTCAAAAGCAGGTCTAACATCAGACGAAGGAGCCAGTCGGCTTCAAGTTTTTGGACCAAACAAATTGGAAGAGAAAAAGGAGAgcaaatttttgaagtttttgggTTTCATGTGGAACCCCTTGTCATGGGTGATGGAAGCTGCTGCTATAATGGCCATCGCTTTGGCCAACGGCGGAGGAAGACCCCCTGACTGGCAAGATTTCGTGGGTATCATTGCTCTCTTGTTCATTAACTCCATAATCAGTTTCATCGAGGAAAACAATGCTGGCAATGCTGCTGCTGCACTCATGGCAGGTTTAGCTCCCAAGACCAAGGTTCTCAGAGATGGGAGATGGACTGAGCAAGATGCTGCAATTTTGGTACCGGGAGACATAATCAGCATCAAACTGGGAGATATCATTCCTGCTGATGCCCGTCTTCTGGAGGGTGATGCTCTGAGTGTTGATCAGTCTGCTTTGACTGGAGAGTCTCTTCCAGTGACAAAGAATCCCTCTGACGAAGTGTTTTCTGGATCAACCGTTAAGAAAGGTGAGATAGAAGCAGTGGTGATTGCCACTGGGGTGCATACCTTTTTTGGCAAGGCTGCTCATCTGGTGGACAGCACCAAGCAAGTTGGGCACTTCCAGAAAGTCCTCTCAGCAATTGGTAACTTCTGCATTTGCTCCATTGCGGCTGGAATAATCATTGAGCTCATAGTCATGTACCCAATACAACACCGCAAGTACAGAGATGGGATTGACAATCTGTTGGTTCTGTTGATTGGAGGGATTCCAATTGCCATGCCAACTGTTTTGTCTGTCACTATGGCTATTGGTTCTCACAGGCTTTCACAGCAAGGTGCCATCACAAAACGTATGACGGCTATTGAGGAAATGGCAGAAATGGATGTCCTCTGCAGTGACAAAACTGGAACTCTCACCCTAAACAAGCTCAGTGTTGATAAAAACCTGATTGAAGTTTTTGCCAAGGGTGTTGAGAAGGATTATGTTATCCTTCTTGCAGCAAGGGCTTCTAGGACTGAGAATCAGGATGCCATAGATGCTGCAATTGTTGGGATGCTTGCTGACCCGAAGGAGGCACGAGCTGTTATCAGGGAGGTCCACTTTCTCCCATTCAATCCTGTGGACAAGAGGACCGCTCTAACTTACATTGATTCTGATGGAAATTGGCATCGGTCTAGCAAAGGTGCTCCTGAACAGATATTGAACCTCTGCAACTGCAAAGAGGATGTCAGGAAAAGGGTTCATGGAGTGATTGACAAGTTTGCTGAGCGTGGACTCCGTTCTTTAGGTGTTGCTAGACAGGAGATACCTGAGAAAAACAAGGATAGTCCTGGTGCACCATGGCAATTTGTTGGTCTGCTACCACTATTCGATCCTCCAAGGCACGATAGTGCAGAAACCATCACAAGAGCTCTGAACCTTGGTGTGAATGTTAAGATGATTACTGGTGATCAGCTTGCCATTGCCAAGGAAACTGGCCGAAGGCTTGGGATGGGAACAAACATGTACCCATCTTCTTCATTGCTTGGTCAAAGCAAGGATGCTTCTGTTTCAGCTCTTCCAGTTGATGAATTGATTGAGAAGGCTGATGGATTTGCTGGAGTTTTTCCTGAACACAAATATGAAATCGTGAAGAGGCTGCAAGAGAGGAAGCATATATGTGGAATGACAGGTGATGGTGTCAACGATGCCCCTGCATTAAAGAAAGCAGATATTGGAATTGCTGTTGCTGATGCTACAGATGCTGCTAGAAGTGCTTCTGACATTGTCCTCACTGAACCTGGTCTTAGTGTCATTATTAGTGCAGTGCTCACCAGCAGGGCAATTTTCCAAAGGATGAAGAATTATACTATCTATGCTGTGTCAATCACCACTCGTATAGTGTTTGGTTTCATGTTTATTGCATTGATTTGGAAATTTGATTTTGCACCCTTCATGGTTTTGATTATTGCCATACTAAACGATGGTACCATCATGACAATATCCAAGGATCGAGTGAAACCATCTCCACAGCCAGACAGCTGGAAGCTGAGGGAGATATTTGCCACTGGTGTTGGGCTAGGTAGTTACTTGGCACTAATGACAGTAGTATTTTTCTGGCTCATGAAGGATACCGACTTCTTCTcgGACAAGTTTGGTGTGAGGCCTATAAGGAAAAGCCCCGGAGAAATGATGGCAGCCCTGTACCTACAAGTCAGTGTTATAAGTCAAGCACTAATTTTTGTCACTAGGTCCCGCAGCTGGTCCTATGTTGAAAGACCCGGTCTTCTCCTACTGAGTGCTTTTATGATTGCACAACTGagacttcaaaattcaaaacctgTTTGTGACAGACTGCCTTCACTACAAAGAAAGGCTATGgcaaagaagagagagaagcaCAGTGGGCAGCTGCACAAAGCACTCTTCATGGTCTTCAGCCACCTGAAACAACCAACCTtttcaatgacaaaaatagCTACAGGGAGCTTTCAGAGATTGCTGAGCAAGCCTAGAGACGTGCTGAGGTTGCAAGGTAAGCCATTGACTTCACTTCTACTGTGTGGCATCAAGCTCAGGGAGCTTCGTACTCTGAAAGGACATGTTGAATCAGTGGTGAAGCTGAAGGGACTTGACATTGATACAATCCAACAGCATTATACGGTTTAA 2742 0.4427 MSGISLEDIKNENVDLERIPVEEVFEQLKCSKAGLTSDEGASRLQVFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIIALLFINSIISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQDAAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPVTKNPSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTKQVGHFQKVLSAIGNFCICSIAAGIIIELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAEMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVEKDYVILLAARASRTENQDAIDAAIVGMLADPKEARAVIREVHFLPFNPVDKRTALTYIDSDGNWHRSSKGAPEQILNLCNCKEDVRKRVHGVIDKFAERGLRSLGVARQEIPEKNKDSPGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDASVSALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITTRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPQPDSWKLREIFATGVGLGSYLALMTVVFFWLMKDTDFFSDKFGVRPIRKSPGEMMAALYLQVSVISQALIFVTRSRSWSYVERPGLLLLSAFMIAQLRLQNSKPVCDRLPSLQRKAMAKKREKHSGQLHKALFMVFSHLKQPTFSMTKIATGSFQRLLSKPRDVLRLQGKPLTSLLLCGIKLRELRTLKGHVESVVKLKGLDIDTIQQHYTV 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3370 913 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 101 347 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3370 913 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 563 678 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3370 913 Gene3D - 881 913 - -
Ssu1g3370 913 SUPERFAMILY HAD-like 325 635 IPR036412 -
Ssu1g3370 913 PRINTS H+-transporting ATPase (proton pump) signature 560 576 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3370 913 PRINTS H+-transporting ATPase (proton pump) signature 445 463 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3370 913 PRINTS H+-transporting ATPase (proton pump) signature 619 644 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3370 913 PRINTS H+-transporting ATPase (proton pump) signature 588 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3370 913 PRINTS H+-transporting ATPase (proton pump) signature 760 781 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu1g3370 913 Gene3D - 94 798 - -
Ssu1g3370 913 Pfam haloacid dehalogenase-like hydrolase 325 602 - -
Ssu1g3370 913 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 34 798 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu1g3370 913 PANTHER CALCIUM-TRANSPORTING ATPASE 1 798 - -
Ssu1g3370 913 Gene3D - 326 625 IPR023214 -
Ssu1g3370 913 SUPERFAMILY Calcium ATPase, transduction domain A 132 229 IPR008250 -
Ssu1g3370 913 Pfam Cation transporter/ATPase, N-terminus 19 81 IPR004014 -
Ssu1g3370 913 SFLD p-type atpase 311 639 IPR044492 -
Ssu1g3370 913 Gene3D - 132 216 - -
Ssu1g3370 913 Gene3D - 341 488 IPR023299 GO:0000166
Ssu1g3370 913 SFLD C1.7: P-type atpase like 311 639 - -
Ssu1g3370 913 CDD P-type_ATPase_H 34 798 IPR006534 GO:0008553|GO:0016021|GO:0120029
Ssu1g3370 913 Pfam E1-E2 ATPase 131 308 - -
Ssu1g3370 913 PRINTS P-type cation-transporting ATPase superfamily signature 329 343 - -
Ssu1g3370 913 PRINTS P-type cation-transporting ATPase superfamily signature 611 623 - -
Ssu1g3370 913 PRINTS P-type cation-transporting ATPase superfamily signature 505 515 - -
Ssu1g3370 913 PRINTS P-type cation-transporting ATPase superfamily signature 179 193 - -
Ssu1g3370 913 PRINTS P-type cation-transporting ATPase superfamily signature 483 494 - -
Ssu1g3370 913 PRINTS P-type cation-transporting ATPase superfamily signature 588 607 - -
Ssu1g3370 913 SMART Cation_ATPase_N_a_2 15 87 IPR004014 -
Ssu1g3370 913 ProSitePatterns E1-E2 ATPases phosphorylation site. 331 337 IPR018303 -
Ssu1g3370 913 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 796 IPR023298 -
Ssu1g3370 913 PANTHER PLASMA MEMBRANE ATPASE 1 798 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3370 Ssu-Chr1 87008627 87015313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3370 882 913 Primary Pumps ATPases AT3G42640 93.750 3.85e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3370 K01535 - gmx:547525 1451.8