Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3364 atgtatgCTGTTCTACAACTcgtttctctcttctctcttccttcTACGTTTCAGACGGAGAACAACCGCAACAGCCACAGAAGATTTGAAGGGAGAACGCTATTGATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGACGGGCCATGTGTTTAGAGATACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACTCTCCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGTAAATCTTTGAAACTGTCAATCCAATCTTCTTCAGGTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACTTTTTCCAAGACCAGTAGCCCAGGAAAACCGCTTATAAAGCCTCGGAAATCATCATCTCAGTTAGAGATAGATTCATCTGAAACTAATAGTGTACAGGATGAATCAGAAGTTTCAAAACTCGCCCCTCCCCCTGAAAAAATGCAGACAGGGCTTCAAGCTGAAGTGGAAAATACAGTGTCTGGTAATGTCATGATGGAAGTAGGAAGCTCTAGTGTAGTATCCAATACAAGATCCCGGAGGAATTTTCATCCAAAGCCTGGATTACGTGGTCAAGAAATTAAAAGCACTGGTCCAGTGACACGTGGTGGTACAACTGGTACAAGTAGGTATGGATTGAGGAACCTCAGATGCAACTCCATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGATatgataaaaaagagaaattgtgAAGGGGAAGGTAGTTCCACTGTCAGAGGGAAGAAAATGAGTGGTTCTTCATTAGAAGGACGGAATTCAGGTCCCAGAAATGGCATATCTATCTCTGATTCAAGAATATCTAAGAATACCCCTCACAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATCAATTAGTGGTCATGCCAGGGGAAGGCCTTCTAGCCAAGGAAATGCTAATCCTGTATCACCCAATGAGTCCCTTGCATTGATACCTTTGCCTCATTCTGGTGGCCTTAATGCTCCTGGTGTATCACATCATTATTCTGTAGATGGTCCCTTAAGTTGTCCTAGCTCTCACAGTAGACCAGGTACTGGCAGTGAGGAGTTATATAGTGTTATGCCTGTATCTCCTTCAGAATATGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACAACGTTACAACATGGATAGTATTGCAGAgttattgttGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGACTGAACTTCTATGATCCGCATAGAGACATGCGATTGGACATTGATAACATGTCATATGAGCAACTGCTGGCTCTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAGCACTATCAGAATGCCTAAAGATAAGTTTTTATCAGTCCTCACCCTCGGACAGTGCAGCTGAGAGTTGCAATCAAGATAAGGATGATAGTGATACCAAATGCATCATTTGCCAgGAGGAATATGTGGTTGCGGATGAAGTGGGGAGTTTGCAATGCGAGCACATGTATCACGTGGTTTGCATACAGCAGTGGCTACGGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGCAACCGTCAAACTCATCCCCAACCCAATGA 1743 0.4274 MYAVLQLVSLFSLPSTFQTENNRNSHRRFEGRTLLMDEYSGKRAIDGVVVPRKGTGHVFRDTANARDRNGQVCSRLTCSSRVNSPKGAQIGSSEKGKSLKLSIQSSSGGKEAIGSSSRTFSKTSSPGKPLIKPRKSSSQLEIDSSETNSVQDESEVSKLAPPPEKMQTGLQAEVENTVSGNVMMEVGSSSVVSNTRSRRNFHPKPGLRGQEIKSTGPVTRGGTTGTSRYGLRNLRCNSISDVIPAGCSPSDSTLNRRKDMIKKRNCEGEGSSTVRGKKMSGSSLEGRNSGPRNGISISDSRISKNTPHRDRSDSNMAPVRTRKSISGHARGRPSSQGNANPVSPNESLALIPLPHSGGLNAPGVSHHYSVDGPLSCPSSHSRPGTGSEELYSVMPVSPSEYGLTHSLMNLDSFRQRYNMDSIAELLLALERIEQDVELTHEQIRLLESNLFLTGLNFYDPHRDMRLDIDNMSYEQLLALEERMGTVSTALTEEALSECLKISFYQSSPSDSAAESCNQDKDDSDTKCIICQEEYVVADEVGSLQCEHMYHVVCIQQWLRLKNWCPICKASVQPSNSSPTQ 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3364 580 MobiDBLite consensus disorder prediction 275 302 - -
Ssu1g3364 580 MobiDBLite consensus disorder prediction 83 155 - -
Ssu1g3364 580 MobiDBLite consensus disorder prediction 190 229 - -
Ssu1g3364 580 Pfam Ring finger domain 526 568 IPR001841 -
Ssu1g3364 580 Coils Coil 422 449 - -
Ssu1g3364 580 MobiDBLite consensus disorder prediction 328 345 - -
Ssu1g3364 580 MobiDBLite consensus disorder prediction 303 317 - -
Ssu1g3364 580 MobiDBLite consensus disorder prediction 242 354 - -
Ssu1g3364 580 MobiDBLite consensus disorder prediction 83 168 - -
Ssu1g3364 580 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 579 IPR013083 -
Ssu1g3364 580 SUPERFAMILY RING/U-box 517 573 - -
Ssu1g3364 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 36 572 IPR045191 GO:0061630
Ssu1g3364 580 SMART ring_2 527 567 IPR001841 -
Ssu1g3364 580 MobiDBLite consensus disorder prediction 255 271 - -
Ssu1g3364 580 ProSiteProfiles Zinc finger RING-type profile. 527 568 IPR001841 -
Ssu1g3364 580 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 36 572 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3364 Ssu-Chr1 86858900 86871523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3364 422 568 C3H Transcription Factor Family AT2G15530 42.857 7.74e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3364 - - gmx:100787213 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0665 5 15631453 15634714 Ssu1g3364 1 86858900 86871523 PCT