Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu1g3359 | ATGGCGGTGGACCTGATGGGCTTCCCCAAAATGGACGAACAGAGGGCAATTCAAGAAGCGGCCTCCGAGGGCCTCAAGGGCATGGAACACCTCGTCCGTCTCCTCTCACACCAACCCTCTCATCTCCACACCGACCTCACCGACGTCACCGTTTCAAAGTTCAAAAAACTCATCTCCCTACTCAACCGCACCGGCCGCGCCCGCTTCCGTCGCGCACCCCTCTCTTCCACCACCCAACCCCACACTCTCGCCCCCTCTCCGCCGCCGGCTAAACCTCCCTCTACCTTCGTCCCCGCGCAGTCCCAGAGCTTGACTCTCGATTTCACCAAACCTAACATCTTCGCCTCCAACAACGCCAAGTCCATGGAGCTCGAGTTCTCTAAAGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAACAAGGCTCCTCCCTCTTCCTCACCCCGCCGCCGCCGCCTTCCTCCGCCGGAAAACCGCCCATCTCGTCGGCGCCGCTCAAGAAGAGGTGCCACGACCACCGCCAACACTCCGACGACGTCTCCGGCTCCAACAAGTGCCACTGCATTAAAAGAAGGAAGAATCGTGTGAAGAAGACGATAAGAATGCCGGCGATTAGTTCGAAGATTGCCGATATTCCGCCGGACGAGTACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCGCCGTACCCGAGGGGATATTACAAGTGCAGTACGGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGTGCTTCGGACGATCCGACGATGTTGATTGTGACGTACGAGGGGGAGCACCGTCACTCGATGCAGACCGCGATGCAGGAGAACATTTCCGGGGCCGTGGGTTTGGTATTCGAGTCAACGTGA | 921 | 0.5917 | MAVDLMGFPKMDEQRAIQEAASEGLKGMEHLVRLLSHQPSHLHTDLTDVTVSKFKKLISLLNRTGRARFRRAPLSSTTQPHTLAPSPPPAKPPSTFVPAQSQSLTLDFTKPNIFASNNAKSMELEFSKETFSVSSNSSFMSSAITGDGSVSNGKQGSSLFLTPPPPPSSAGKPPISSAPLKKRCHDHRQHSDDVSGSNKCHCIKRRKNRVKKTIRMPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSMQTAMQENISGAVGLVFEST | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu1g3359 | 306 | MobiDBLite | consensus disorder prediction | 179 | 199 | - | - | |
Ssu1g3359 | 306 | PANTHER | WRKY TRANSCRIPTION FACTOR 21-RELATED | 10 | 304 | IPR044810 | GO:0003700 | |
Ssu1g3359 | 306 | SMART | WRKY_cls | 227 | 287 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu1g3359 | 306 | MobiDBLite | consensus disorder prediction | 146 | 199 | - | - | |
Ssu1g3359 | 306 | SUPERFAMILY | WRKY DNA-binding domain | 225 | 287 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu1g3359 | 306 | Pfam | Plant zinc cluster domain | 181 | 225 | IPR018872 | - | |
Ssu1g3359 | 306 | Pfam | WRKY DNA -binding domain | 229 | 285 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu1g3359 | 306 | Gene3D | WRKY domain | 215 | 287 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Ssu1g3359 | 306 | MobiDBLite | consensus disorder prediction | 69 | 97 | - | - | |
Ssu1g3359 | 306 | PANTHER | WRKY PROTEIN | 10 | 304 | - | - | |
Ssu1g3359 | 306 | ProSiteProfiles | WRKY domain profile. | 222 | 288 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu1g3359 | Ssu-Chr1 | 86730184 | 86731726 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu1g3359 | 1 | 305 | WRKY Transcription Factor Family | AT2G24570 | 62.654 | 2.19e-123 | 354 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | WRKY | Ssu1g3359 | WRKY | 5.1e-26 | CL0274 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu1g3359 | - | - | gmx:100127394 | 478.018 |