Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3359 ATGGCGGTGGACCTGATGGGCTTCCCCAAAATGGACGAACAGAGGGCAATTCAAGAAGCGGCCTCCGAGGGCCTCAAGGGCATGGAACACCTCGTCCGTCTCCTCTCACACCAACCCTCTCATCTCCACACCGACCTCACCGACGTCACCGTTTCAAAGTTCAAAAAACTCATCTCCCTACTCAACCGCACCGGCCGCGCCCGCTTCCGTCGCGCACCCCTCTCTTCCACCACCCAACCCCACACTCTCGCCCCCTCTCCGCCGCCGGCTAAACCTCCCTCTACCTTCGTCCCCGCGCAGTCCCAGAGCTTGACTCTCGATTTCACCAAACCTAACATCTTCGCCTCCAACAACGCCAAGTCCATGGAGCTCGAGTTCTCTAAAGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAACAAGGCTCCTCCCTCTTCCTCACCCCGCCGCCGCCGCCTTCCTCCGCCGGAAAACCGCCCATCTCGTCGGCGCCGCTCAAGAAGAGGTGCCACGACCACCGCCAACACTCCGACGACGTCTCCGGCTCCAACAAGTGCCACTGCATTAAAAGAAGGAAGAATCGTGTGAAGAAGACGATAAGAATGCCGGCGATTAGTTCGAAGATTGCCGATATTCCGCCGGACGAGTACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCGCCGTACCCGAGGGGATATTACAAGTGCAGTACGGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGTGCTTCGGACGATCCGACGATGTTGATTGTGACGTACGAGGGGGAGCACCGTCACTCGATGCAGACCGCGATGCAGGAGAACATTTCCGGGGCCGTGGGTTTGGTATTCGAGTCAACGTGA 921 0.5917 MAVDLMGFPKMDEQRAIQEAASEGLKGMEHLVRLLSHQPSHLHTDLTDVTVSKFKKLISLLNRTGRARFRRAPLSSTTQPHTLAPSPPPAKPPSTFVPAQSQSLTLDFTKPNIFASNNAKSMELEFSKETFSVSSNSSFMSSAITGDGSVSNGKQGSSLFLTPPPPPSSAGKPPISSAPLKKRCHDHRQHSDDVSGSNKCHCIKRRKNRVKKTIRMPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHSMQTAMQENISGAVGLVFEST 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3359 306 MobiDBLite consensus disorder prediction 179 199 - -
Ssu1g3359 306 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 304 IPR044810 GO:0003700
Ssu1g3359 306 SMART WRKY_cls 227 287 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g3359 306 MobiDBLite consensus disorder prediction 146 199 - -
Ssu1g3359 306 SUPERFAMILY WRKY DNA-binding domain 225 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g3359 306 Pfam Plant zinc cluster domain 181 225 IPR018872 -
Ssu1g3359 306 Pfam WRKY DNA -binding domain 229 285 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g3359 306 Gene3D WRKY domain 215 287 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g3359 306 MobiDBLite consensus disorder prediction 69 97 - -
Ssu1g3359 306 PANTHER WRKY PROTEIN 10 304 - -
Ssu1g3359 306 ProSiteProfiles WRKY domain profile. 222 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3359 Ssu-Chr1 86730184 86731726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3359 1 305 WRKY Transcription Factor Family AT2G24570 62.654 2.19e-123 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g3359 WRKY 5.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3359 - - gmx:100127394 478.018