Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3355 ATGGAGCTAAAAAATGAGAAGCAAGTCAGGTTCTCCAATGATGGAAAACAGACTCTTGAACCTCCTTGGGAAAAGATAGACACCCACAAACACCATGAGAAGTCATTCCCAGTTTATCCAGAATTCAAAACGAGTAGTGGTGATAAGAACAGAATGAGTATCAGAATTCCCACACTTGGAAAGTTGAAGGTTTTCCCAGAAAATCATGAGCCATGGGAGAAGAGAATTCTTGATCCTGGCAGTGATGTCATTTTGGAGTGGAACCGGGCATTCCTGTTTTCTTGCATTGTATCACTGTTTGTTGATCCACTGTTTTTATACCTCCCCTCAGTAGCAAATGATGGGAAGTCATCATGTATGGCTActgatttgaatttaggaattCTTGTGACATGTTTCCGGACATTTGCTGATGTTTTTTATCTGCTCAACATGGCAATAAAGTTCAGAACTGCCTACGTGTCACCAAGTTCAAGGGTTTTTGGAAAGGGTGAGCTTGTTATGGATCCTAGTCTGATTGCAAGGAGGTATTTGAGATCCGAGTTCTTCCTAGATTTTGTAGCTACACTGCCTCTTCCCCAGATtgtgatttggttcattatgccAGCAATTAGAAGCTCCCATGCTGATCATACCAACAACGCACTTGTACTGATTGTTCTGCTTCAATATGTCCCcagattatatttgattttcccATTAAGTTCTCAGATTGTTAAAGCCACCGGTCTAGTTACAAAGACGGCTTGGGCTGGAGCTGCTTACAATCTTTTGCTTTACATGTTAGCAAGTCATGTCTTGGGGGCATCATGGTACTTGTTATCAATTGAAAGGCATGCTACATGCTGGAAATCCGAATGCAGAAATGAAAGCCTCCCTGTAAAATGTGTTCTTGAGTACTTAGATTGCAGTACTTTAAAGAATGATGACCGTATGAAGTGGGTAAACACTACTTCTGTGTTTGGTAACTGCAATCCAGAAAATAGCACCAGTTTCAACTATGGAATTTTTGGAAATGCAGTGGAAAATAATGTTGTCTCCTCTGAGTTTATACAGAAGTATCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTAAGTTCTTATGGCCAGGGTTTGACTACAAGCACATTCGTTTGGGAAACTGCATTTGCAATACTCATAGCTATTCTGGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACCTATTTGCAATCTATTACCGTGAGGCTTGAAGAGTGGAGACTCAAGCGACGTGACACTGAAGAGTGGATGAAACACCGCCAGCTCCCACAAAATCTCAGAGAGCGTGTCCGAAGATTTGTTCAGTACAAGTGGGTTGCAACTCGTGGGGTTGATGAAGAAACAATCCTACGTGGCCTGCCTACTGACCTACGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCCTTTTTCTCACAAATGGATGATCAACTACTTGATGCAATATGTGAGCGATTGGTATCATCCTTGAGTACTCAAGGCACATACATAGTCAGAGAAGGAGACCCGGTTACAGAGATGCTTTTTATCATCAGAGGGAGACTTGAAAGCTCAACCACAAATGGAGGCAGAACTGGTTTCTTTAACTCCATCACCTTGAGGCCAGGTGATTTCTGTGGAGAAGAGCTACTTGCTTGGGCGTTGCTTCCAAAATCCACTGTCAACTTGCCTTCTTCTACAAGAACAGTGAAAGCCCTTGTGGAAGTGGAAGCCTTTGCACTAAGGGCAGAAGATCTTAAATTTGTGGCCAATCAGTTCAGACGTCTCCACAGCAAGAAGTTACAGCACACTTTCCGTTTCTACTCTTACCATTGGAGGACATGGGCTGCATGCTTCATTCAGGCCGCTTGGCGCCGGTTCAAGAAGAGAAGGATGGCAAAGAGCCTTAGCTTGAGGGAATGCCAGTCCTTCAGTTATGATGAACAAGTCAGGGATCAAATGGAACACAAGGAAGACGAGCACAGTGCAGTGACTTCAAACACTGCACAAGTAAAACAGAACCTAGGTGTCACTATTCTGGCTTCAAGGTTTGCTGCAAACACAAGGAGAGGGGTTCAGAAGATCAAGGATGTAGAGATGCTCAAGTTGCAAAAGCCTGACGAGCCAGACTTTTCAGAAGAGCCTGATGATGATTAG 2181 0.4255 MELKNEKQVRFSNDGKQTLEPPWEKIDTHKHHEKSFPVYPEFKTSSGDKNRMSIRIPTLGKLKVFPENHEPWEKRILDPGSDVILEWNRAFLFSCIVSLFVDPLFLYLPSVANDGKSSCMATDLNLGILVTCFRTFADVFYLLNMAIKFRTAYVSPSSRVFGKGELVMDPSLIARRYLRSEFFLDFVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIVKATGLVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNESLPVKCVLEYLDCSTLKNDDRMKWVNTTSVFGNCNPENSTSFNYGIFGNAVENNVVSSEFIQKYLYCLWWGLQNLSSYGQGLTTSTFVWETAFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMKHRQLPQNLRERVRRFVQYKWVATRGVDEETILRGLPTDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTVNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAACFIQAAWRRFKKRRMAKSLSLRECQSFSYDEQVRDQMEHKEDEHSAVTSNTAQVKQNLGVTILASRFAANTRRGVQKIKDVEMLKLQKPDEPDFSEEPDDD 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3355 726 SUPERFAMILY Voltage-gated potassium channels 81 407 - -
Ssu1g3355 726 SUPERFAMILY cAMP-binding domain-like 415 607 IPR018490 -
Ssu1g3355 726 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 44 722 - -
Ssu1g3355 726 Pfam Ion transport protein 87 412 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu1g3355 726 Gene3D - 115 411 - -
Ssu1g3355 726 MobiDBLite consensus disorder prediction 1 24 - -
Ssu1g3355 726 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 44 722 - -
Ssu1g3355 726 Pfam Cyclic nucleotide-binding domain 508 596 IPR000595 -
Ssu1g3355 726 Gene3D Helix hairpin bin 413 476 - -
Ssu1g3355 726 Gene3D Jelly Rolls 483 603 IPR014710 -
Ssu1g3355 726 PRINTS EAG/ELK/ERG potassium channel family signature 354 371 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3355 726 PRINTS EAG/ELK/ERG potassium channel family signature 398 407 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3355 726 PRINTS EAG/ELK/ERG potassium channel family signature 380 391 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3355 726 PRINTS EAG/ELK/ERG potassium channel family signature 448 455 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3355 726 PRINTS EAG/ELK/ERG potassium channel family signature 145 154 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g3355 726 CDD CAP_ED 485 616 IPR000595 -
Ssu1g3355 726 ProSiteProfiles cAMP/cGMP binding motif profile. 485 568 IPR000595 -
Ssu1g3355 726 SMART cnmp_10 485 616 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3355 Ssu-Chr1 86607422 86612008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3355 10 720 Ion Channels AT2G24610 70.499 0.0 1051
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3355 K05391 - gmx:100803334 1346.64