Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3352 ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAACAACAGCAGATGTACCACCCCGGCATGCTCGCCGCTGCTATGTCTCAGaTGGAGCCTGTTCCAAGTGGAAATTTGCCTCCCGGTTTTGATACTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCCCTTGCTGGCTGCAAGctcataagaaaagaaaagTCCTCTTATGGTTTTGTGGACTTCCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGGCAACTGTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACATCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCGAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAATGCCATAAATGATATGACAGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACCAGCTCCACTGAAGAGAAGAACAATGACAGCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCCGAAAACAATCCTTCATACACCACTGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATACACTGGGGGCTGGGGTAATTGAGGAGGTCCGTGTTCAGAGGGACAAGGGTTTTGGATTTGTCAGATATAACACTCATGAGGAAGCTGCATTGGCCATTCAGATGGCTAGTGGAAGAATAATTCGTGGGAAAACTATGAAGTGTTCATGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCAAATCCACTACCTCCTCCTGCTCAACCATATCAAATGCTTCCCACTGCAGGGATGAACCAAGGGTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACTGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA 1305 0.4529 MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDFHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQNAINDMTGKWLGNRQIRCNWATKGAGTSSTEEKNNDSQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHTLGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMASGRIIRGKTMKCSWGSKPTPPGTASNPLPPPAQPYQMLPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3352 434 MobiDBLite consensus disorder prediction 219 261 - -
Ssu1g3352 434 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Ssu1g3352 434 CDD RRM2_PUB1 141 215 - -
Ssu1g3352 434 Gene3D - 1 137 IPR012677 -
Ssu1g3352 434 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 4 431 - -
Ssu1g3352 434 CDD RRM3_TIA1_like 262 336 - -
Ssu1g3352 434 Gene3D - 138 239 IPR012677 -
Ssu1g3352 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
Ssu1g3352 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Ssu1g3352 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Ssu1g3352 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Ssu1g3352 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Ssu1g3352 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
Ssu1g3352 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Ssu1g3352 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
Ssu1g3352 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Ssu1g3352 434 Gene3D - 240 340 IPR012677 -
Ssu1g3352 434 SUPERFAMILY RNA-binding domain, RBD 134 244 IPR035979 GO:0003676
Ssu1g3352 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 4 431 - -
Ssu1g3352 434 SUPERFAMILY RNA-binding domain, RBD 251 345 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3352 Ssu-Chr1 86558433 86565636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3352 47 336 Eukaryotic Initiation Factors Gene Family AT4G34110 26.910 6.69e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3352 K13201 - gmx:100777108 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3352 1 86558433 86565636 Ssu1g3352 1 86558433 86565636 ECH