Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu1g3352 | ATGCAACAGAGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAACAACAGCAGATGTACCACCCCGGCATGCTCGCCGCTGCTATGTCTCAGaTGGAGCCTGTTCCAAGTGGAAATTTGCCTCCCGGTTTTGATACTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCCCTTGCTGGCTGCAAGctcataagaaaagaaaagTCCTCTTATGGTTTTGTGGACTTCCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGGCAACTGTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACATCAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCGAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAATGCCATAAATGATATGACAGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACCAGCTCCACTGAAGAGAAGAACAATGACAGCCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCCGAAAACAATCCTTCATACACCACTGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTCCATTGTCAGTTCCATACACTGGGGGCTGGGGTAATTGAGGAGGTCCGTGTTCAGAGGGACAAGGGTTTTGGATTTGTCAGATATAACACTCATGAGGAAGCTGCATTGGCCATTCAGATGGCTAGTGGAAGAATAATTCGTGGGAAAACTATGAAGTGTTCATGGGGTAGTAAACCAACTCCTCCTGGAACAGCTTCAAATCCACTACCTCCTCCTGCTCAACCATATCAAATGCTTCCCACTGCAGGGATGAACCAAGGGTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACTGGTAATTCATCAAGACAGCAGCTTATGTACTATCGTTGA | 1305 | 0.4529 | MQQRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDFHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQNAINDMTGKWLGNRQIRCNWATKGAGTSSTEEKNNDSQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHTLGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQMASGRIIRGKTMKCSWGSKPTPPGTASNPLPPPAQPYQMLPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR | 434 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu1g3352 | 434 | MobiDBLite | consensus disorder prediction | 219 | 261 | - | - | |
Ssu1g3352 | 434 | SUPERFAMILY | RNA-binding domain, RBD | 40 | 133 | IPR035979 | GO:0003676 | |
Ssu1g3352 | 434 | CDD | RRM2_PUB1 | 141 | 215 | - | - | |
Ssu1g3352 | 434 | Gene3D | - | 1 | 137 | IPR012677 | - | |
Ssu1g3352 | 434 | PANTHER | OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 | 4 | 431 | - | - | |
Ssu1g3352 | 434 | CDD | RRM3_TIA1_like | 262 | 336 | - | - | |
Ssu1g3352 | 434 | Gene3D | - | 138 | 239 | IPR012677 | - | |
Ssu1g3352 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 264 | 330 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | SMART | rrm1_1 | 263 | 332 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | SMART | rrm1_1 | 56 | 125 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | SMART | rrm1_1 | 141 | 214 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 262 | 336 | IPR000504 | GO:0003723 | |
Ssu1g3352 | 434 | Gene3D | - | 240 | 340 | IPR012677 | - | |
Ssu1g3352 | 434 | SUPERFAMILY | RNA-binding domain, RBD | 134 | 244 | IPR035979 | GO:0003676 | |
Ssu1g3352 | 434 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 4 | 431 | - | - | |
Ssu1g3352 | 434 | SUPERFAMILY | RNA-binding domain, RBD | 251 | 345 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu1g3352 | Ssu-Chr1 | 86558433 | 86565636 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu1g3352 | 47 | 336 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.910 | 6.69e-23 | 99.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu1g3352 | K13201 | - | gmx:100777108 | 820.076 |