Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3351 ATGTGGTTGTCAAAGAATCAGTCAGAGAAGAAGGATGGTGTGAGTGGATTAGTAGCAGTGgcaatagataaagaaaaagggaGCCAAAATGCACTAAAATGGGCCGTTGACAATCTCCTCATCAGAAGTGCAACTGTAATTCTCATCCATGTCAAGCTTCTCTCACCTTCACTATCTTCATCGCCTTCTCTTTTCACCCCAAGGATAAGTGCTCTCCTTGGTGATGATAGTTCACTGCTATGCAAAGAACCCGAAGgcaataacaaaaatgttttcCTCCCATATCGTGTCTTCTGTACACGGAAAGATATACAATGCAAGGACGTCCTACTAGAAGATGTAGATATATCCAAAGCTATAGTTGAATATGCTTCTCAGGCAGGAATTGAGCATCTGGTTCTTGGCTCTTCAACAAAAAATGGTTTGCTTAAAAGATTCAAGGTATCAGATATTCCAGGAACAGTTTCAAAAGGGGCGCCAGATTTCTGTACAGTCTATGTTATTTCTAAATGTAAGATTCACTCAATGCGATCTGCTTCTCGTCCTGCTCCGGCCATTGTCCCTAACCCGCTCAGTCAAGCTAGTGTCAGGTCAGACCATTCAGACCCAAATGTGCCACTGGCTCAAAGCATAAAAGGACAAGAAACGCATTCCTTAGATGCTGCACGACCGCGTAGTTCACATGATGGAACAGAATCATTCAGGTCACCATTCACTAGGAAATGTTACAATGGCAGACACTATGGGGACACTCCCAAGCCAGATACTGACATATCCTTTGTAAGCTCTGGAAGGCCAAGCACAGAACGCTTGTTCCCTTCATGGAACTCGGATACAGGAATGTCCAACCCTCGGCTATCATATAGCTCAGACACAGATGCAAACTTCAGCTTTGAGTCGATGTATTATGGAAGGAAGTCTATGGAAATGAGCACTCCTCTTGAATTCTCATCTCTCTCATTTGAAAGTGACAGGCATTCATCTTCTACATCCCAAGCCGTGGATGACATGGAAGCTGAAATGAGGAGATTGAAGTTGGAGCTGAAGCAAACAATGGAAATGTATAACACAGCCTGTAAAGAAGCACTCACAGCACAGCAGAAGGCAGTGGAACTTCAGCGGTGGAAATTAGAGGAAGAGAGGAGATTGGAAGAGGCAAGGCAGGCTGAGGAAGCAGCACTGGCGATCGCAGAAAAAGAGAAAGCCAAGTCTAAAGCAGCCATTGAGGCTGCTGAAGCACAAAAGAGGATTGCAGAACTTGAAGCACAGAAGAGACTCAATGCAGAAATGAAAGCACTTAGAGAatcacaagagaaaagaaaagtgctTGATGCTTTGGTAAATGTAGATGTCAGGTATAGAAGGTACACAATCGAGGAGATTGAAGCTGCAACAAGTTTTTTTTCAGAATCACTGAAAATTGGAGAAGGTGGGTATGGTCCAGTTTTTAAGTGCCTTTTGGATCACACACCTGTTGCAGTCAAGGTTTTGCGTCCTGATGCAGCACAAGGAAGATCACAGTTTCAACGAGAGGTTGAGGTGCTGAGCTGCATACGGCATCCAAACATGGTTCTCCTCCTAGGAGCATGTCCAGAATATGGTTGTCTAGTGTATGAACACATGGCAAATGGAAGCTTGGACGATTGCCTCTTTCGACGAGGCAACACTCGCCCACTTTCTTGGCAGCTAAGGTTCAAAATAGCAGCTGAAATAGGCACAGGCTTGCTGTTCCTGCACCAGACAAAACCGGAACCTCTGGTGCACAGAGACTTGAAACCAGCCAACATCTTGCTTGACAGAAACAATGTTGCCAAAATCAGTGACGTAGGTTTGGCCAGGCTGGTTCCACCATCTGTGGCAGACAATGTCACACAATATCACATGACATCCGCAGCAGGAACCTTCTGCTACATAGATCCTGAGTACCAGCAGACAGGTATGTTAGGTGTGAAATCAGACGTATACTCTCTTGGGATCATTTTTTTGCAAACTTTGACAGCAAAACCACCAATGGGTTTGACCCATCATGTTGAAAGGGCCATTGAGAAGGGAACTTTTGCTGAGATGTTGGATCCATCAGTGCCTGATTGGCCACTAGAGGAGGCCTTGAAGTTGGCTAAGTTGGCACTGCAATGTGCCGAACTAAGGCGCAAAGACAGGCCTGATCTTGCCAAGGTTGTCCTGCCAGAACTCAGCAGGCTAAGAGATCTGGCCGAAGATGATAATCTAGTTTCAGTTTTGGCTACCCCTACGAATCTCTCCCGTGACAGACAAGTTTCTGTGCAGTTGgatggaGGGTGTTCTCTATTTCCTCACTCGGAGGAAATTAGGGCAAGCACATCAGTCGATTTCTGA 2355 0.4425 MWLSKNQSEKKDGVSGLVAVAIDKEKGSQNALKWAVDNLLIRSATVILIHVKLLSPSLSSSPSLFTPRISALLGDDSSLLCKEPEGNNKNVFLPYRVFCTRKDIQCKDVLLEDVDISKAIVEYASQAGIEHLVLGSSTKNGLLKRFKVSDIPGTVSKGAPDFCTVYVISKCKIHSMRSASRPAPAIVPNPLSQASVRSDHSDPNVPLAQSIKGQETHSLDAARPRSSHDGTESFRSPFTRKCYNGRHYGDTPKPDTDISFVSSGRPSTERLFPSWNSDTGMSNPRLSYSSDTDANFSFESMYYGRKSMEMSTPLEFSSLSFESDRHSSSTSQAVDDMEAEMRRLKLELKQTMEMYNTACKEALTAQQKAVELQRWKLEEERRLEEARQAEEAALAIAEKEKAKSKAAIEAAEAQKRIAELEAQKRLNAEMKALRESQEKRKVLDALVNVDVRYRRYTIEEIEAATSFFSESLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFRRGNTRPLSWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNNVAKISDVGLARLVPPSVADNVTQYHMTSAAGTFCYIDPEYQQTGMLGVKSDVYSLGIIFLQTLTAKPPMGLTHHVERAIEKGTFAEMLDPSVPDWPLEEALKLAKLALQCAELRRKDRPDLAKVVLPELSRLRDLAEDDNLVSVLATPTNLSRDRQVSVQLDGGCSLFPHSEEIRASTSVDF 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3351 784 Pfam Protein kinase domain 470 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3351 784 MobiDBLite consensus disorder prediction 256 278 - -
Ssu1g3351 784 ProSiteProfiles Protein kinase domain profile. 468 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3351 784 MobiDBLite consensus disorder prediction 191 216 - -
Ssu1g3351 784 SUPERFAMILY Protein kinase-like (PK-like) 451 727 IPR011009 -
Ssu1g3351 784 PANTHER OS02G0152300 PROTEIN 5 782 - -
Ssu1g3351 784 PANTHER UNIVERSAL STRESS FAMILY PROTEIN 5 782 - -
Ssu1g3351 784 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 146 - -
Ssu1g3351 784 Coils Coil 327 354 - -
Ssu1g3351 784 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Ssu1g3351 784 SMART serkin_6 468 732 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3351 784 Gene3D HUPs 17 168 IPR014729 -
Ssu1g3351 784 CDD STK_N 17 170 - -
Ssu1g3351 784 Gene3D Transferase(Phosphotransferase) domain 1 541 748 - -
Ssu1g3351 784 Pfam Universal stress protein family 18 146 IPR006016 -
Ssu1g3351 784 Gene3D Phosphorylase Kinase; domain 1 447 540 - -
Ssu1g3351 784 Coils Coil 360 440 - -
Ssu1g3351 784 MobiDBLite consensus disorder prediction 179 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3351 Ssu-Chr1 86546927 86552811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3351 1 740 Receptor kinase-like Gene Family AT1G78940 58.621 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Ssu1g3351 Pkinase 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3351 - - gmx:100803867 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3351 1 86546927 86552811 Ssu1g3351 1 86546927 86552811 ECH