Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3348 ATGCTCTTCACGTTGGCCACTTGTTTTTTGCCATCATTGGCTGACAACGCTCAAGTTCTGATGAACTTCAAAAGCTTCTTGTCCAATGCTGATGCTTTGAAGAACTGGGGGGACCAATCAATTGGTCTGTGCAGCTGGATTGGTATATTATGCTTCAATCAAACATTTCATGGCTTGAGATTAGAGAATATGGGACTAAGTGGCACTATTAACGTAGACACGCTGCTTGAATTGTCTGTTTTGAACAGTTTTAGTGTCATTAACAACAGCTTTGAGGGTCCAATGCCTGCATTCAAGAAACTTGTGCGTTTAAGGGCATTGTTTCTGAGCAATAACAAGTTCTCTGGTGAAATTCCGGATGATGCTTTTGAAGGCATGACAAGTCTCAAGAGAGTATTCTTGGCTGAAAATGGGTTCACGGGTCATATTCCTATATCCCTCGCTAAATTGCCTAAACTTTTGGATGTGGACATACATGGAAATAGTTTTGAAGGCAATATACCAGAATTTCAACAGAGGGATTTCAGAGTCTTTAATTTGTCTAACAACCAGTTGGAGGGTCCAATACCACAAAGCTTAATCAACAAGGATCCTAGCTCATTTGCTGGCAATCAAGGTCTATGTGGAAAGCCTTTAAGTCCCTGCATCGGAAGTCCCCCCTCACGCTCTGATCAAAGCCCAAATTCGACTCTTCCACcccaagaaaaagaacaaaagaagaaaaaccgCGTCCTTTTAACCGCCATTGTTGTGGTGGGTGTGATTGTGTTGGCTTCAATACTAGCACTTCTGTTCATCCGTTACCGTCGAAAGCAACACGTGTTGGTCGGGGATGCACAACCCCAGAACGTTAATTCAGTTTCTAGTGAGTCCAAATCCATTGTTGTAACCGCTGAATCCAAGAAAAGTGAAGATGGAAGTTTGAACTTCGTTAGGAACGAAAGGGAGGGGTTTGATTTGCAAGATTTGCTTAGGGCCTCAGCTGAGGTTCTGGGGAGTGGCAGTTTTGGATCCACGTACAAGGCCATGCTTCTGAACGGGCCAGTTGTGGTGGTGAAGAGATTCAAGCACATGAACAACGTTGGGAAGAAAGAGTTTTTTGAACACATGAAAAGGCTTGGACGGTTGTCACACCCCAACCTACTCCCTCTTGTTGCATTTTACtatggaaaagaagagaagcTTTTGGTTCATGACTTTGCTGAAAATGGCAGCTTGGCTAGTCACCTTCATGGGAGAGGTGGTTGTGAGTTGGACTGGTCAACTCGTTTGAAGGTCATAAAAGGAGTGGCTCGGGGGTTAGCTTACCTTTACAGAGAGTTCCCCGACCAAGACTTACCGCATGGTCATCTTAAATCGTCGAACGTTGTGTTGGACCGTTTATTTGAGCCTCGTTTGGCAGAGTATGGACTCGTGGCAGTGGTGGACAAGAGCCATGCTCAGCAGTTCATGGTAGCTTACAAGTCTCCAGAGGTGAGCCAGTTCGAGAAGCCCAGTGAGAAGAGTGACATTTGGTGTTTGGGGATTCTCATATTGGAACTTCTGACGGGGAGGTTCCCCGCAAACTATCTGAGACATGGGAAGGGTGCAAGTGAGGATTTGGCTGCATGGGTGAACTCAATTGTGAGGGAAGGGTGGAGTGGGGAGGTGCTTGATAAGGACATTCCCGGGAGAGGGAATGGAGAGGGTGAGATGTTGAAGCTATTGAGGATTGGGATGGGTTGCTGTGAATGGAGTTTGGAGAGTAGGTGGGATTGGAGGGAGGCAGTGGCCAAGATTGAGGAGTTGAAGGAGAGAGATGTTGAAGATGGAAGTGAAGGGGATCATTTGTACTCAACATCTATGAGTCAGGAtgacttctctctctctcactag 1875 0.4427 MLFTLATCFLPSLADNAQVLMNFKSFLSNADALKNWGDQSIGLCSWIGILCFNQTFHGLRLENMGLSGTINVDTLLELSVLNSFSVINNSFEGPMPAFKKLVRLRALFLSNNKFSGEIPDDAFEGMTSLKRVFLAENGFTGHIPISLAKLPKLLDVDIHGNSFEGNIPEFQQRDFRVFNLSNNQLEGPIPQSLINKDPSSFAGNQGLCGKPLSPCIGSPPSRSDQSPNSTLPPQEKEQKKKNRVLLTAIVVVGVIVLASILALLFIRYRRKQHVLVGDAQPQNVNSVSSESKSIVVTAESKKSEDGSLNFVRNEREGFDLQDLLRASAEVLGSGSFGSTYKAMLLNGPVVVVKRFKHMNNVGKKEFFEHMKRLGRLSHPNLLPLVAFYYGKEEKLLVHDFAENGSLASHLHGRGGCELDWSTRLKVIKGVARGLAYLYREFPDQDLPHGHLKSSNVVLDRLFEPRLAEYGLVAVVDKSHAQQFMVAYKSPEVSQFEKPSEKSDIWCLGILILELLTGRFPANYLRHGKGASEDLAAWVNSIVREGWSGEVLDKDIPGRGNGEGEMLKLLRIGMGCCEWSLESRWDWREAVAKIEELKERDVEDGSEGDHLYSTSMSQDDFSLSH 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3348 624 MobiDBLite consensus disorder prediction 609 624 - -
Ssu1g3348 624 Gene3D Transferase(Phosphotransferase) domain 1 401 616 - -
Ssu1g3348 624 Pfam Leucine rich repeat N-terminal domain 15 51 IPR013210 -
Ssu1g3348 624 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 3 605 - -
Ssu1g3348 624 Gene3D Ribonuclease Inhibitor 14 173 IPR032675 -
Ssu1g3348 624 Pfam Leucine rich repeat 103 162 IPR001611 GO:0005515
Ssu1g3348 624 MobiDBLite consensus disorder prediction 212 238 - -
Ssu1g3348 624 Gene3D Ribonuclease Inhibitor 176 215 IPR032675 -
Ssu1g3348 624 MobiDBLite consensus disorder prediction 218 233 - -
Ssu1g3348 624 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Ssu1g3348 624 Gene3D Phosphorylase Kinase; domain 1 290 400 - -
Ssu1g3348 624 ProSiteProfiles Protein kinase domain profile. 325 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3348 624 Pfam Protein kinase domain 328 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3348 624 PANTHER LRR RECEPTOR-LIKE KINASE 3 605 - -
Ssu1g3348 624 MobiDBLite consensus disorder prediction 598 624 - -
Ssu1g3348 624 SUPERFAMILY Protein kinase-like (PK-like) 329 595 IPR011009 -
Ssu1g3348 624 SUPERFAMILY L domain-like 17 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3348 Ssu-Chr1 86531356 86534283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3348 16 622 Receptor kinase-like Gene Family AT4G31250 46.188 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g3348 Pkinase 7.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3348 - - gmx:100803999 1055.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3348 1 86531356 86534283 Ssu1g3348 1 86531356 86534283 ECH