Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3340 ATGTCCATGGATCCTCCAAAGAAACCTAACAAGATCAGAGAAATTGTGAGACTTCAACAGATCCTTAAGAAATGGAGAAGGGTAGCCAACTCTTCAAAAACAAGCAGAAGTAACAACACCAGCAGCAGCAAGAGCATCAACTTTCTGAAAAGAACACTTTCTATATCTGAACGTGAGGGAGGAGGATCAAGCACTGTTGTTCCCAAGGGCTACGTAGCTGTTTGTGTCGGCGTGGACCTCAGCAGGTTCGTTATACCAACCGAGTATTTGGGTCACCAGGCCTTTCACATGTTGCTCAGAGAAGCTGAGGAAGAATTTGGGTTTGAACAAACTGGGGTTCTGAGGATTCCTTGTGAAGTATCCGTGTTTGAGAGCATCTTGAAGACTGTGGAGAGAAAGGACAGGCTTTTCACTCAGAAATGCAGATTTAGCATTGAAAAGATGATGGGATATTGTTCCTCAAACCACCTTGCTTATTCTCATCATCCTCAAAGTCCAATGTGTAGATAG 510 0.4373 MSMDPPKKPNKIREIVRLQQILKKWRRVANSSKTSRSNNTSSSKSINFLKRTLSISEREGGGSSTVVPKGYVAVCVGVDLSRFVIPTEYLGHQAFHMLLREAEEEFGFEQTGVLRIPCEVSVFESILKTVERKDRLFTQKCRFSIEKMMGYCSSNHLAYSHHPQSPMCR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3340 169 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 8 169 IPR003676 GO:0009733
Ssu1g3340 169 Pfam Auxin responsive protein 23 129 IPR003676 GO:0009733
Ssu1g3340 169 PANTHER OSJNBA0060N03.10 PROTEIN 8 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3340 Ssu-Chr1 86456251 86456760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3340 7 169 Calmodulin-binding Proteins AT4G31320 53.125 6.39e-56 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3340 K14488 - gmx:100527662 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3340 1 86456251 86456760 Ssu1g3340 1 86456251 86456760 ECH
Ssu1g3340 1 86456251 86456760 Ssu5g0688 5 16387916 16388407 PCT