Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3332 ATGGTACAGAAGGAAAAGGAAGCAATTGTCAAGGAAGGGACGAATATAGAAATGGAAGGAACTGGTGCAAAGGAGGAAACCCTACCACCGGGGTTTCGATTTCATCCTACCGATGAAGAACTTGTCACTTGTTATCTCGTGAAAAAGATATCGGATTCTAATTTTACAGGCAGAGCAGTAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGGAAGGCTAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCCACGGGTGTGAGAACCAATCGAGCAACGAACACCGGGTATTGGAAGACTACAGGGAAAGACAAGGAGATCCTCGACAGTGGAACATCGGAGTTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGCAGAGCTCCCAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAATCCAGCTATAGAACCAACAagCAGGATGAATGGGTGGTTTGCCGGATATTCAAGAAGAGTGGAGGTGCAAAAAAGTACCCTTCCTCTAACCATGCAAGAGCAGTGAATCCTTACAACTTGGAAATAGGACCAAATATTATGCCACCACCAATGATGCAACTGGGAGATCCTGCTGCTCATTTCCTTTATGGACGGAATTACATGAGTAGTGCAGAGTTAGCTGAAGTTGCTAGGGTTTTAAGAGGGGGTGGATCAACAAGTAGTGCCAACCTACCAATGCAATCCCAATTGAGCTACCCTACATCAGCAGCAGCAGGAGGATTCACCATTTCAGGGCTCAATTTGAATCTTGGAGGAGGTGGAGCAGCCACAACACAACCCATTTTGCGGCCAATgcaaccttctcctcctccggTTCATACAATGGCTCAAGTAATTGATGTCAATTCCAGCATGATGACAGCCACTTCTCTTGGTGCAGAGAATGTAGGTTATGGATCAGAAATGAGTAACATGAATTCTCATGGGAATAGGTTTATGGGGATGGACCATTGCATGGATCTAGACCACTATTGGCCTTCCTACTAA 1062 0.4397 MVQKEKEAIVKEGTNIEMEGTGAKEETLPPGFRFHPTDEELVTCYLVKKISDSNFTGRAVTDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILDSGTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSYRTNKQDEWVVCRIFKKSGGAKKYPSSNHARAVNPYNLEIGPNIMPPPMMQLGDPAAHFLYGRNYMSSAELAEVARVLRGGGSTSSANLPMQSQLSYPTSAAAGGFTISGLNLNLGGGGAATTQPILRPMQPSPPPVHTMAQVIDVNSSMMTATSLGAENVGYGSEMSNMNSHGNRFMGMDHCMDLDHYWPSY 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3332 353 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 13 350 - -
Ssu1g3332 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 350 - -
Ssu1g3332 353 SUPERFAMILY NAC domain 21 177 IPR036093 GO:0003677|GO:0006355
Ssu1g3332 353 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
Ssu1g3332 353 Gene3D NAC domain 37 180 IPR036093 GO:0003677|GO:0006355
Ssu1g3332 353 ProSiteProfiles NAC domain profile. 28 177 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3332 Ssu-Chr1 86335018 86336932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3332 24 353 NAC Transcription Factor Family AT2G24430 51.705 1.73e-113 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu1g3332 NAM 7.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3332 - - gmx:100804931 649.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3332 1 86335018 86336932 Ssu1g3332 1 86335018 86336932 ECH