Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3329 ATGGTAGCTGTCCAAAATAATCACATGGAAAGGGAACGAACCCGGAAACGCCCTCGTCTCGCCTGGGACGTAGCCCCTCCGTCAGCGCCCGAGGCGCAACGGGCTCTGCCGGTGCCCGGTGACGAAGGGTTCGAAAGAAAACACGTTTCGCCTCCGAGAAGGGACGACGATCGCGAAGGCCATTATGTCTTCAATCTCGGCGAAAGTCTCACTCCTAGATATAAAATCCTCGGCAAGATGGGTGAAGGCACATTTGGTCGGGTTTTGGAATGTTGGGACCGCCAAACCAGAGAATATGTGGCTATCAAGGTAGTTAGAAGTATACGGAAATATCGAGATGCGGCGATGCTTGAGGTTGATGTGCTTCAACATCTAGTCAAGAATGATAGAGGGAGCTCGCGATGTGTGCAGATTCGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCttatttgattttctaaagagaaataaatactGCCCATTCCCTGTGGATCTTGCTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGAATATGTAAAGCTCCCTAGCTATAAGAGGGTTTCCTCAGATGAAACGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATTTGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATTATTCTAGGTCTAGGGTGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGGGTGAAGCTTTGTTTCAGACTCATGAAAACTTGGAGCACCTAGCAATGATGGAGAGAGTTTTGGGACCTATTCCAGAGCACATGATTCAAAGCTCTAACAAGGGCGCAGAAAAGTATTTCAAGCGTGGATCACGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAATGCAGTGAAGAAGCTGGGGGATCTTAAGGATATTGTATCACGTAATGTGGACTCTTCAAGGTCCTCCTTAACTGACTTGTTACATGGCTTATTAACATATGATCCGGCCAAACGTCTAACAGCTTGCCAAGCCCTCGATCATCCCTTCTTTAGGAATCCAACTTAA 1212 0.4497 MVAVQNNHMERERTRKRPRLAWDVAPPSAPEAQRALPVPGDEGFERKHVSPPRRDDDREGHYVFNLGESLTPRYKILGKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMLEVDVLQHLVKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLAREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKRVSSDETQFRCLPKSSAIKLIDFGSTAFDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPIPEHMIQSSNKGAEKYFKRGSRLRWPEGAVSRESINAVKKLGDLKDIVSRNVDSSRSSLTDLLHGLLTYDPAKRLTACQALDHPFFRNPT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3329 403 CDD PKc_CLK 61 399 - -
Ssu1g3329 403 SUPERFAMILY Protein kinase-like (PK-like) 61 401 IPR011009 -
Ssu1g3329 403 Gene3D Transferase(Phosphotransferase) domain 1 128 399 - -
Ssu1g3329 403 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 49 400 - -
Ssu1g3329 403 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Ssu1g3329 403 ProSiteProfiles Protein kinase domain profile. 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3329 403 MobiDBLite consensus disorder prediction 40 59 - -
Ssu1g3329 403 SMART serkin_6 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3329 403 Pfam Protein kinase domain 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3329 403 PANTHER BNAA07G37640D PROTEIN 49 400 - -
Ssu1g3329 403 MobiDBLite consensus disorder prediction 1 59 - -
Ssu1g3329 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3329 Ssu-Chr1 86300107 86303837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3329 73 401 Core Cell Cycle Gene Families AT3G48750 27.083 2.71e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Ssu1g3329 Pkinase 1.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3329 K08287 - gmx:100782453 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3329 1 86300107 86303837 Ssu1g3329 1 86300107 86303837 ECH