Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3315 atgtttGCAGTTGGACCATATTCGCCGGCGACCACACCCCCGCTGCCGACGTTGCCGGAACCAGCACCACCTCCACTCCACTCCTCGCCGTCACCTTCAATGTCTCCGACGACTCCAGTCACCCCGCCGGTGTCGTCCTCGCCGTCGCCGGAAACTTTACTCGTTTCAGATTCGCCGCCGCCGCCATCTTCAGTTACACCACCTCCTATGACGGTGCCGTTGTCTCCGTCTCCGTCTCCGGCGTCACCGGATTCTATGCCACCGCCGTTTCCACCGTTCGCCGTTGCACCGTCGCCTCCAACTCCAACCGCCGCATCTCAGCCACCGCCGTTTCCATTTGCCACAGCGCCTGCAACAACGTTTCCACCGTTTGCAGTTACACCATCGCCTCCAACTCCCACCGCCACTTTTCCACCTGCATTGTCAGAGGAAATGCCGGCGCCGGCGACTATTCCTCCACCTCCTCTACCTACGGCATTCACGGGACCTACCTTGGCTACACCGTCGAGCCCCGCGTTGCCGGCATCGGCGCCGGAAGTGAATTTGCCGTCAACAACACCAAGTGGAAGTTTGCCGGTGGCTGTGGAAGTTCAGAAGGTTTCAACCTTCCACGTGTCAAGTGGCCTTATCATTGGGCTTGTAATTGGAGCTATCGTTTTCGTGTTTGTTTTTACTGTTGGATCAGTTCTATGCAGGaataggaagaaaaacaaacagAAGAATCTCAGCACCCATCGCTACAAGGAATCATCACCTTATGTTGGATCCAATGGGTCTCATGTTATTCAAGTGATATCAAATCCATCGCTGCCACCACATCTCACTGACGGCAGTGGAGCTTCTGGCTCTGTTAATTCGGTGTCTGTGAAAGCAATTCCAAACAGTGCTCCAAGGGTTGCCTTTGGTTCCGTGAATGGTATTTTCACATATGATGAATTATTAGTGGCCACTAGTCGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGCGGTTTTGGGTACGTGTACAAAGGAGTTCTCGCATGTGGAAAGGAAATTGCAGTTAAGCAGTTAAAATCAGGAAGCCAACaaggagagagagaatttcAAGCTGAGGTTGAGACCATTAGCCGAGTGCACCATAAACATCTTGTTGAATTGGTTGGATACTGCGTTACCAGGACAGAAAGATTGCTTGTTTACGAATTTGTTCCAAATGACACATTGGAATTCCACTTACACGGGGAGGGGAAGACCCTTTTAGAATGGGCAACGAGAGTTAAAATTGCCTTAGGATCTGCAAAAGGGCTCGCATATCTACACGAAGATTGTAATCCGGCAATTATTCACCGTGATATTAAAGCATCTAATATTCTTCTTGATTTTAAGTTTGAACCCAGGGTTTCTGACTTTGGCCTGGCAAAAATCTTCCCTAACACCGATAGTTGCATTAGTCACCTCACCACCCGAGTAGTGGGAACCTTTGGGTACCTGGCTCCAGAGTATGCTTCAAGTGGTAAATTGACGGATAAATTAGATGTCTATTCCTACGGCGTCATGCTTTTAGAACTTATAACCGGACGTCCACCAATCATTGTAGCAGAATCAAGGAATGAGAGCCTCATTGACTGGGCTAGGCCATTGCTTGCTCAAGCACTGCAAGATGGTGACTTCGACAATCTTGTTGATCCAAGGTTGCAGAAAAATTACGAAGCTGATGAGATGGTTAGAATGATTACCTGTGCAGCTGCTTCTGTGCGCCATTCAGCCAGGCTTCGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTGGTTTCTCTAACCGATCTTGTTGGAGATGTTACACCGGGGCATACCACGGTATACAATTGGTCAAATAGTTCATATTATGATGCCAGCCAATACCAGCAGGACATACGAAATTTCAATTTGGCATTATCATGTCAGAAATACAGCTCCAGCGGGCATAGTGAAACCACTAGTGCTTATGGTCTTCACTCATCAGGCTCAAGTAGTGAGGCTCAGCAATGA 2013 0.4814 MFAVGPYSPATTPPLPTLPEPAPPPLHSSPSPSMSPTTPVTPPVSSSPSPETLLVSDSPPPPSSVTPPPMTVPLSPSPSPASPDSMPPPFPPFAVAPSPPTPTAASQPPPFPFATAPATTFPPFAVTPSPPTPTATFPPALSEEMPAPATIPPPPLPTAFTGPTLATPSSPALPASAPEVNLPSTTPSGSLPVAVEVQKVSTFHVSSGLIIGLVIGAIVFVFVFTVGSVLCRNRKKNKQKNLSTHRYKESSPYVGSNGSHVIQVISNPSLPPHLTDGSGASGSVNSVSVKAIPNSAPRVAFGSVNGIFTYDELLVATSRFSESNLLGEGGFGYVYKGVLACGKEIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELVGYCVTRTERLLVYEFVPNDTLEFHLHGEGKTLLEWATRVKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDFKFEPRVSDFGLAKIFPNTDSCISHLTTRVVGTFGYLAPEYASSGKLTDKLDVYSYGVMLLELITGRPPIIVAESRNESLIDWARPLLAQALQDGDFDNLVDPRLQKNYEADEMVRMITCAAASVRHSARLRPRMSQIVGALEGVVSLTDLVGDVTPGHTTVYNWSNSSYYDASQYQQDIRNFNLALSCQKYSSSGHSETTSAYGLHSSGSSSEAQQ 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3315 670 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Ssu1g3315 670 MobiDBLite consensus disorder prediction 9 46 - -
Ssu1g3315 670 SMART serkin_6 320 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3315 670 SUPERFAMILY Protein kinase-like (PK-like) 301 595 IPR011009 -
Ssu1g3315 670 Gene3D Transferase(Phosphotransferase) domain 1 396 605 - -
Ssu1g3315 670 MobiDBLite consensus disorder prediction 122 141 - -
Ssu1g3315 670 ProSiteProfiles Protein kinase domain profile. 320 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3315 670 MobiDBLite consensus disorder prediction 54 117 - -
Ssu1g3315 670 Pfam Protein kinase domain 321 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3315 670 MobiDBLite consensus disorder prediction 122 137 - -
Ssu1g3315 670 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 88 643 - -
Ssu1g3315 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Ssu1g3315 670 CDD STKc_IRAK 326 597 - -
Ssu1g3315 670 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK14 88 643 - -
Ssu1g3315 670 MobiDBLite consensus disorder prediction 649 670 - -
Ssu1g3315 670 MobiDBLite consensus disorder prediction 1 117 - -
Ssu1g3315 670 Gene3D Phosphorylase Kinase; domain 1 285 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3315 Ssu-Chr1 85936867 85941602 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3315 164 670 Trihelix Transcription Factor Family AT4G32710 50.482 5.19e-148 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu1g3315 Pkinase 2.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3315 - - gmx:100810262 824.313