Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3307 ATGGAAGGTGACAGGACAATCCCTGCTGCATCAGATGGGGTGATAGATGGTGTTCAGAAAATTAGAGCTCTGCATGGGAGGACCACTGGCCCTACAAGGCGATCTACAAAAGGACAATGGACACCTGAAGAGGATGAGATTTTGCGGAAGGCTGTTCAGcgttttaaaggaaaaaactggaaaaaaatAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCTTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAGGatgaaataattattgatttggTGAATAGATATGGGCCTAAAAAGTGGTCTACTATCGCACAACACTTGCCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTACTATAAATAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCTCTCATACGTGCACATCAGATTTATGGGAACAGATGGGCAGAATTAGCGAAGTTATTGCCTGGAAGGACAGACAATGCTATAAAAAACCATTGGAACAgttctgtcaaaaaaaaattggattctTACTTGGCATCAGGCTTGCTTACTCGGTTACAAAATGTACCACTTGTTGGAAATCTGAATCAACCTATTACTTCAACCTCTTCGAGGTTGCAGCAGAGTGGAGATGATAATGGTCCTAGGGGGACTGAAGGAGAGGAAGTGTCACAGTGTAGCCAGGAGTCAGCTAATGCTGGTCATTTTTCATCAGCCAGAGAGATGAGTAGTGTTGTTTTACAAACTGGGAATGAATACAGGCCAAATGAAGAATCTAATCTAGGAAAGGATTATAGTCCTAGTCAAGCATCCTGTTCAGAGCCATATTACGTGTCTCTGGATGAAGTTACTGCATCCCTTCCAGACATGGCTGGCCAAGAGATTTGCACTTCTCAATTCATTGAGCAGAAATATTCACACAAACCTAGAAATTCCACAAATGGGGACTACCAGCTGGATTTAATTGACTTAACCAATATTTCCTCAGTGGACTTTGGGCAGGAATCATCACAGTTGCAAAATGATTGCATAGCTCCTAGTGAAAGTCATGACATGGTGAATGTTCCGTTTCAGACTTCAGTGGGTTTAGGCGTTTCAACAATCATGGGATCTGCATCTATGGACTCTGTTAAACCAGAACACATGTTGATGTCTGATGATGAATGTTGCAGAATCCTATTTTCAGAAACAATAAGCGATGAATGCTTTTCTTCTGGAGATTATAATAAAGGTGTAAACATGGTTGACTTGTCAGGATTCACCTCATTTCTTTGTCAGTCATCATTACCATCTGTCCCATCAGTACTTTCTTCTACTGGTGATAGGTTGATGTATACGGCTGAAGCCAATCGGTTGGTTGGGTCTGAGGATCAGCAGTTTGTCTCCAGAACACAGGATAACATAATTTATGCCAATGACTTATCCAGTTCTCCTTGTATCCATATAGACAGCACAGAAATGCAAGGGCCATCAGATGTTGTGAAAGATAACTCAAAATTGGTCCCTGTAAATAGTTTTGACTGTGGATCAGACGCTAAGCAAACTTCCTATCCAATGGATGAAAAGCCAAATGTGCATACAGAACAGGAGGACACAGGTGCTCTATGTTATGAACCTCCCCGCTTTCCAAGCTTGGATATTCCTTTCTTAAGCTGTGATCTTATACAATCTGGGAGTGATATGCAGCAAGAATTCAGTCCCCTGGGTATCCGCCAATTTATGATGTCTTCTATGAACTGTCTGACTCCGTTTAGATTATGGGACTCACCTTCTCGGGATGATAGTCCAGATGCTTTGTTGAAAAGTGCAGCTAAAACCTTCACAGGTACACCATCCATATTAAAGAAACGAAACAGGGATCTTTTATCTCCACTATCAGATAAACGAATTGACAAGAAACTTGAGATTGAAATGACATCAACCTTGATAAAAAACTTTTCCCGATTGGATGTCATGTTTGATGACAATGAGACTCAGGGAGCAGATTTGCTTCCTCCATCTTCAATGCAAAAAGGGGATTCTGGTACCTCTGTTGAAGATGATAAAGAGAATTATGGGCAAGCTGTTAAAGTGGAACAAGTAGAGGAGAAAAATAAGTCTGCAATTTTGGACGAcaaaaaatcagaaaaagaTTCAGGTGATAGTAATTCCCAGGATAAAATTAAGCAGCAACCTCTTGATGTTGATTCTGAGATAAAGAATGATGTTAGTGCTGCTGCTGAGATTGTGCAACAACCATCTGGAATTTTGGTTGAACATGATATGAATGACCTGTTACTGTGTTCTCctgatcaaattaatttaaaatcagaaAGGGTTCTTAGTTTAAGTGCTAGAACTAAGAAAAACCCATGCTCAAGGATTAACTCACCATCTGTTTGGGTGAAGGAGCATGAAAGACTTTCAGTTGCTGTTACTTGTGTACAGTCTGTCAGTTCATCAGGCCCAGGGGAGAATTTGGGTGACCACCCTGGAAACGATGGTGGTCTTGAAACATGTAgcatATTTGGTGGAACACCTTTTAGGAAAAGCATTGAATCGCCTTCAGCATGGAAATCTCCTTGGTTCATCAACACTTTTTTGTCTAGCCCCAGGATTGATACTGAAATTACAATCGAGGATTTTGGGTATTTCATGAGCCCTGGTGACAGAAGCTATGATGCAATCGGGTTAATGAAACAGATAAGCGAACAAACTGCTGCTCAATATGCCAGCGCTCATGAGATTTTGGGAAATGAAACTCCTAAGGCGTTACCAAAAGATGCGTCTGGAAACGACAGGGTTGGAGACCAGGAAAATAACGATCCTCATAATCAACATGGGAACCATTCTCAGTTGGCTTCAAGTGCTGTGGTGGAGCGACGCATACTTGACTTTAGCGAATGCGGAACTCCGGTCAAGGGTGATAACAGCAAATCCTCAGCTATGAGCTTCTCAAGCCCTTCTTCATATTTGTTGAAGGGCTGTAGATAG 3021 0.4048 MEGDRTIPAASDGVIDGVQKIRALHGRTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNRYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPTINKEAWTQEEELALIRAHQIYGNRWAELAKLLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTRLQNVPLVGNLNQPITSTSSRLQQSGDDNGPRGTEGEEVSQCSQESANAGHFSSAREMSSVVLQTGNEYRPNEESNLGKDYSPSQASCSEPYYVSLDEVTASLPDMAGQEICTSQFIEQKYSHKPRNSTNGDYQLDLIDLTNISSVDFGQESSQLQNDCIAPSESHDMVNVPFQTSVGLGVSTIMGSASMDSVKPEHMLMSDDECCRILFSETISDECFSSGDYNKGVNMVDLSGFTSFLCQSSLPSVPSVLSSTGDRLMYTAEANRLVGSEDQQFVSRTQDNIIYANDLSSSPCIHIDSTEMQGPSDVVKDNSKLVPVNSFDCGSDAKQTSYPMDEKPNVHTEQEDTGALCYEPPRFPSLDIPFLSCDLIQSGSDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTGTPSILKKRNRDLLSPLSDKRIDKKLEIEMTSTLIKNFSRLDVMFDDNETQGADLLPPSSMQKGDSGTSVEDDKENYGQAVKVEQVEEKNKSAILDDKKSEKDSGDSNSQDKIKQQPLDVDSEIKNDVSAAAEIVQQPSGILVEHDMNDLLLCSPDQINLKSERVLSLSARTKKNPCSRINSPSVWVKEHERLSVAVTCVQSVSSSGPGENLGDHPGNDGGLETCSIFGGTPFRKSIESPSAWKSPWFINTFLSSPRIDTEITIEDFGYFMSPGDRSYDAIGLMKQISEQTAAQYASAHEILGNETPKALPKDASGNDRVGDQENNDPHNQHGNHSQLASSAVVERRILDFSECGTPVKGDNSKSSAMSFSSPSSYLLKGCR 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3307 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Ssu1g3307 1006 MobiDBLite consensus disorder prediction 213 256 - -
Ssu1g3307 1006 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Ssu1g3307 1006 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Ssu1g3307 1006 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Ssu1g3307 1006 PANTHER TRANSCRIPTION REPRESSOR MYB5 5 1005 - -
Ssu1g3307 1006 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Ssu1g3307 1006 MobiDBLite consensus disorder prediction 939 953 - -
Ssu1g3307 1006 Gene3D - 142 199 - -
Ssu1g3307 1006 CDD SANT 143 183 IPR001005 -
Ssu1g3307 1006 PANTHER MYB PROTEIN-RELATED 5 1005 - -
Ssu1g3307 1006 Gene3D - 36 88 - -
Ssu1g3307 1006 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Ssu1g3307 1006 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Ssu1g3307 1006 CDD SANT 40 83 IPR001005 -
Ssu1g3307 1006 Gene3D - 89 140 - -
Ssu1g3307 1006 MobiDBLite consensus disorder prediction 978 1006 - -
Ssu1g3307 1006 MobiDBLite consensus disorder prediction 673 743 - -
Ssu1g3307 1006 MobiDBLite consensus disorder prediction 982 1000 - -
Ssu1g3307 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Ssu1g3307 1006 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Ssu1g3307 1006 MobiDBLite consensus disorder prediction 691 733 - -
Ssu1g3307 1006 MobiDBLite consensus disorder prediction 926 963 - -
Ssu1g3307 1006 CDD SANT 91 135 IPR001005 -
Ssu1g3307 1006 SMART sant 88 137 IPR001005 -
Ssu1g3307 1006 SMART sant 36 85 IPR001005 -
Ssu1g3307 1006 SMART sant 140 188 IPR001005 -
Ssu1g3307 1006 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Ssu1g3307 1006 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3307 Ssu-Chr1 85824553 85831491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3307 21 1006 MYB Transcription Factor Family AT4G32730 45.490 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu1g3307 Myb_DNA-binding 2.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3307 - K09420 gmx:100811335 1803.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3307 1 85824553 85831491 Ssu1g3307 1 85824553 85831491 ECH
Ssu5g0713 5 17560819 17585308 Ssu1g3307 1 85824553 85831491 PCT