Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3298 atggaACAGAGCGAAACGACGTTCGATTTAGCTCCGAGGAAATTGGCTAGGCAATTGGATTTCACGGCCGTTTGCGGAGATCCGTCACACCTGAAACTGCCGCCGCCGTCGCCGCCGTCACAGACGCTTCTGCGGCCGCCGTCGCATTCTTCGTTGCAATTACAGTTGGAATTACAGCCACCGGTGCAACGGTCGTGGTTATATTCACAGCCACAGAAACAACGGCAGAGAACACCTGAGTCTAAGGTAATGCCGCAATTGCAAGCACCACGACCGAAGCTAGTTTCGCCGATTCGTCGAATTCCGAACCCCGTGCAGAAACTTCCGGTGAAGGTGTTGCAAGTGATGACGTCAGAGTCTCCTATATCACAACCTCGACATAATGTGGAATTAAAGGACACCACTCCAAAGAAACAGAAACAATGTAATTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGGATCTATTGTGATGGCTGCAACTGTGTAAATTGTCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAACGCAATCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCAAGAACCACGGGATTCAAAGGAATGTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTAAAGAAAGAAGAGCCATTTTTCACAAAGAATATAATCTAGTTCACATCAAACAGGCAGCTAATGCTGCCATTACTGGAGTTGTTGGATCATCTGGCTATGGAACCCATACAACACCcaagaagagaaaaattcagGAAATGTTTCCTGGAAAGTCGGCCATGGATCAAACTGTTAACATGACTGCTCAATACCAACAGGAAATTGATCCTATGGCTTCGTCCCCTTCATCTCTGTCAGATTCCTTTGTTTCTGACCCTGCCAACACAAGAATTTCAGGGTCTTCAAGATCTACATACCgGTCCGTATTGGCAGATGTCCTCCAGCTACAGAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCACGAGTAGCTGCAAAGACAAACGCAGaaatgagaggcaaagtagaccaGCAAACAAAAACTGGGAACTTTGAAGCTTCTGTTGCTTCATCAGCTAAATCACTGCAAGAAACTAGAGATGTCCACCAGCCTGTTTGTGATGATCATGTGAATAAAGATGAAGCAGATGCAGTTGATATTCCCAATTATAATAGACCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGATGATATGCCTTTTGGAAATAGTTCTGCAAATGGAGTTGCATGCAACAGCACTTATCAAAACATGATTCAAAAGTCGTTTAATTCTGATGGATGCACTGATGTTTACGGAGAGCAGGAAAGGCTTATATTGTCCAAGTTCTTGGACGTTCTTCGTGGACTCGTTACTCATGGTAGCATAAAAGAAACAATGTGCTATTCATCGACCAAGAAAGGGGGGAGAAGCAAGAAAGAACCTGCTGACAACGGCAATATTGGTGCTGAAACGGACGTTGGGAGTGAGAAGGGAATTCATGGCAACTGCATTGCAAATTACCCCATCCCATCGGTTACTAAAATATCCCAAACAAATTATGCCATAGCTAATGGACATGGTAATGATCTTTCGTTGACCTGA 1782 0.4259 MEQSETTFDLAPRKLARQLDFTAVCGDPSHLKLPPPSPPSQTLLRPPSHSSLQLQLELQPPVQRSWLYSQPQKQRQRTPESKVMPQLQAPRPKLVSPIRRIPNPVQKLPVKVLQVMTSESPISQPRHNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQEPRDSKECEIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSKERRAIFHKEYNLVHIKQAANAAITGVVGSSGYGTHTTPKKRKIQEMFPGKSAMDQTVNMTAQYQQEIDPMASSPSSLSDSFVSDPANTRISGSSRSTYRSVLADVLQLQNVKNLCSLFVVLSRVAAKTNAEMRGKVDQQTKTGNFEASVASSAKSLQETRDVHQPVCDDHVNKDEADAVDIPNYNRPLSPETLALMCDEQDDMPFGNSSANGVACNSTYQNMIQKSFNSDGCTDVYGEQERLILSKFLDVLRGLVTHGSIKETMCYSSTKKGGRSKKEPADNGNIGAETDVGSEKGIHGNCIANYPIPSVTKISQTNYAIANGHGNDLSLT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3298 593 PANTHER TESMIN/TSO1-RELATED 1 573 IPR028307 -
Ssu1g3298 593 MobiDBLite consensus disorder prediction 336 355 - -
Ssu1g3298 593 MobiDBLite consensus disorder prediction 68 83 - -
Ssu1g3298 593 MobiDBLite consensus disorder prediction 529 552 - -
Ssu1g3298 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 223 257 IPR005172 -
Ssu1g3298 593 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 139 174 IPR005172 -
Ssu1g3298 593 MobiDBLite consensus disorder prediction 29 50 - -
Ssu1g3298 593 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 573 - -
Ssu1g3298 593 ProSiteProfiles CRC domain profile. 138 260 IPR005172 -
Ssu1g3298 593 MobiDBLite consensus disorder prediction 68 93 - -
Ssu1g3298 593 SMART CXC_2 220 261 IPR033467 -
Ssu1g3298 593 SMART CXC_2 137 177 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3298 Ssu-Chr1 85643442 85648634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3298 13 529 CPP Transcription Factor Family AT4G29000 45.788 1.01e-130 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Ssu1g3298 TCR 3.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3298 - K21776 gmx:100811459 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3298 1 85643442 85648634 Ssu1g3298 1 85643442 85648634 ECH