Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3291 ATGGAGAGGATCGTCGGCGGCAAGTTTAAGATTGGTCGGAAAATCGGGAGCGGCTCCTTTGGAGAAATTTATATTGCCTCAAATATGGACACTTCTGAGATTGTCGCCGTCAAGATGGAAAGCAAGAAGACCAAACATCCACAACTATTGTATGAAGCAAAGTTATATAGTATTCTTCAAGGAGaaaGTGGTATTCCAAGTATGAAGTGGTGCGGTACTGATGGAGACAATAATGCTCTGGTTATTGATCTTCTAGGACGGAGTCTTGAAGACTTTTTTGTCTATTGTGGGAGgaagttttcattaaaaacagTTTTGATGTTGGCTGATCAGATGCTGACAAGAATAGAGTACTTACATTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAATCAAGTCAGGTTTATATTATTGATTTCGGACTAGCAAAAAGATATAGGGACCCTAACTCAAACAAGCATATTCCTTACAGAGAGAATAAAAGCTTAACAGGAACTGCACGTTATGCAAGTTGCAATACTCACATGGGAATTGAACAAAGTCGTCGCGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGtcaccaaaaaggaaaaatatgacAATATTTGTGAGAAGAAATTATCAACTCCCATTGAGATGCTTTGCAGTTCATATCCTGTGGAGTTCGCTACTTACTTCCATTATTGCCAATCTTTGGCATTTGATCAACACCCTGATTATGGATTCTTGAAGCGCCTGTTTCATGATTTGTTCAAAAGAGAAGGATATGATTCTGACTATATATTTGACTGGACCATCCTAAAATATCAGCAGGCACAACTGACAAAGAAACAAAACCAATCATCTCCTTCAGCTGCAGTGCCTAGCAGTCTAGAATCAGTAGTTGTGGCAAAGCATAAAGGAGTCAACGATTCAGCTCATGTTACTGTAACAAAAATGTTAGCCAATCTTGAACGCCCAAGTGCACGTGTGCAGCCTAAGCCATCTAATGTTCGGAATCTGGATGCCAAGTATCGGACCAAGAAAAATGGTGTGAACAATAGTCCATCTACTTCATCTGCCATACCCAAATCCTCTACAGAAAATGTCTCAAAACCAGAAAAGCACATAGGAACCTCAAACCTTGGTCGTGTATTTGGGAGTAATTCCCGTGTTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCGTCAGCCAAATAG 1281 0.395 MERIVGGKFKIGRKIGSGSFGEIYIASNMDTSEIVAVKMESKKTKHPQLLYEAKLYSILQGESGIPSMKWCGTDGDNNALVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKSSQVYIIDFGLAKRYRDPNSNKHIPYRENKSLTGTARYASCNTHMGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVTKKEKYDNICEKKLSTPIEMLCSSYPVEFATYFHYCQSLAFDQHPDYGFLKRLFHDLFKREGYDSDYIFDWTILKYQQAQLTKKQNQSSPSAAVPSSLESVVVAKHKGVNDSAHVTVTKMLANLERPSARVQPKPSNVRNLDAKYRTKKNGVNNSPSTSSAIPKSSTENVSKPEKHIGTSNLGRVFGSNSRVSSSWIPSLRRISSAK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3291 426 MobiDBLite consensus disorder prediction 345 410 - -
Ssu1g3291 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Ssu1g3291 426 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 411 - -
Ssu1g3291 426 MobiDBLite consensus disorder prediction 366 410 - -
Ssu1g3291 426 Pfam Protein kinase domain 10 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3291 426 Gene3D Transferase(Phosphotransferase) domain 1 1 339 - -
Ssu1g3291 426 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Ssu1g3291 426 SMART serkin_6 9 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3291 426 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3291 426 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Ssu1g3291 426 PANTHER CASEIN KINASE-RELATED 1 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3291 Ssu-Chr1 85483035 85488692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3291 9 236 AGC Kinase Gene Family AT3G08720 26.293 9.17e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Ssu1g3291 Pkinase 4.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3291 K08960 - gmx:100792736 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3291 1 85483035 85488692 Ssu5g0724 5 18386499 18393152 PCT