LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g3291	ATGGAGAGGATCGTCGGCGGCAAGTTTAAGATTGGTCGGAAAATCGGGAGCGGCTCCTTTGGAGAAATTTATATTGCCTCAAATATGGACACTTCTGAGATTGTCGCCGTCAAGATGGAAAGCAAGAAGACCAAACATCCACAACTATTGTATGAAGCAAAGTTATATAGTATTCTTCAAGGAGaaaGTGGTATTCCAAGTATGAAGTGGTGCGGTACTGATGGAGACAATAATGCTCTGGTTATTGATCTTCTAGGACGGAGTCTTGAAGACTTTTTTGTCTATTGTGGGAGgaagttttcattaaaaacagTTTTGATGTTGGCTGATCAGATGCTGACAAGAATAGAGTACTTACATTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAATCAAGTCAGGTTTATATTATTGATTTCGGACTAGCAAAAAGATATAGGGACCCTAACTCAAACAAGCATATTCCTTACAGAGAGAATAAAAGCTTAACAGGAACTGCACGTTATGCAAGTTGCAATACTCACATGGGAATTGAACAAAGTCGTCGCGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGtcaccaaaaaggaaaaatatgacAATATTTGTGAGAAGAAATTATCAACTCCCATTGAGATGCTTTGCAGTTCATATCCTGTGGAGTTCGCTACTTACTTCCATTATTGCCAATCTTTGGCATTTGATCAACACCCTGATTATGGATTCTTGAAGCGCCTGTTTCATGATTTGTTCAAAAGAGAAGGATATGATTCTGACTATATATTTGACTGGACCATCCTAAAATATCAGCAGGCACAACTGACAAAGAAACAAAACCAATCATCTCCTTCAGCTGCAGTGCCTAGCAGTCTAGAATCAGTAGTTGTGGCAAAGCATAAAGGAGTCAACGATTCAGCTCATGTTACTGTAACAAAAATGTTAGCCAATCTTGAACGCCCAAGTGCACGTGTGCAGCCTAAGCCATCTAATGTTCGGAATCTGGATGCCAAGTATCGGACCAAGAAAAATGGTGTGAACAATAGTCCATCTACTTCATCTGCCATACCCAAATCCTCTACAGAAAATGTCTCAAAACCAGAAAAGCACATAGGAACCTCAAACCTTGGTCGTGTATTTGGGAGTAATTCCCGTGTTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCGTCAGCCAAATAG	1281	0.395	MERIVGGKFKIGRKIGSGSFGEIYIASNMDTSEIVAVKMESKKTKHPQLLYEAKLYSILQGESGIPSMKWCGTDGDNNALVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGRKSSQVYIIDFGLAKRYRDPNSNKHIPYRENKSLTGTARYASCNTHMGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVTKKEKYDNICEKKLSTPIEMLCSSYPVEFATYFHYCQSLAFDQHPDYGFLKRLFHDLFKREGYDSDYIFDWTILKYQQAQLTKKQNQSSPSAAVPSSLESVVVAKHKGVNDSAHVTVTKMLANLERPSARVQPKPSNVRNLDAKYRTKKNGVNNSPSTSSAIPKSSTENVSKPEKHIGTSNLGRVFGSNSRVSSSWIPSLRRISSAK	426

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu1g3291	426	MobiDBLite	consensus disorder prediction	345	410	-	-
Ssu1g3291	426	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
Ssu1g3291	426	PANTHER	CASEIN KINASE I-LIKE PROTEIN	1	411	-	-
Ssu1g3291	426	MobiDBLite	consensus disorder prediction	366	410	-	-
Ssu1g3291	426	Pfam	Protein kinase domain	10	224	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu1g3291	426	Gene3D	Transferase(Phosphotransferase) domain 1	1	339	-	-
Ssu1g3291	426	SUPERFAMILY	Protein kinase-like (PK-like)	4	290	IPR011009	-
Ssu1g3291	426	SMART	serkin_6	9	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu1g3291	426	ProSiteProfiles	Protein kinase domain profile.	9	277	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Ssu1g3291	426	ProSitePatterns	Protein kinases ATP-binding region signature.	15	38	IPR017441	GO:0005524

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g3291	Ssu-Chr1	85483035	85488692	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g3291	9	236	AGC Kinase Gene Family	AT3G08720	26.293	9.17e-16	77.0

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CK1_CK1	Ssu1g3291		Pkinase	4.7e-29	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g3291	K08960		-	gmx:100792736	792.727

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g3291	1	85483035	85488692	Ssu5g0724	5	18386499	18393152	PCT

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