Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3289 ATGGCATCATCCTTAATGTTATCAGCTACTTCAATGCTGAGACCATGTACcacttcatcatcatcatcatgtaCTTCACGAAGACTTGCTCTCTTTCACCTTGTCACCACTGGTGGTATTGCTCTCCCACAATCTAAGTTGTTTGGTGCAAAAGGATCAGAGTACTTAAGAGTAGCAGAGGCTACTGCTGCAGAAAAGCTAGCCCAACCAGAGAAAAATTTGTTTGACTGGGTCAAAAATGACAACCGAAGATTTCTCCATGTTGTGTACCGTGTTGGAGACTTGGAGAAGACTATAAAGTTCTACACTGAATGCCTTGGCATGAAGCTATTGAGAAAACGTGATATACCTGAAGACAGATATTCTAACGCTTTTCTTGGATATGGGCCTGAAGAGTCCAATTTTACAGTTGAACTTACTTACAATTATGGAGTGGATAATTATGACATTGGAACTGGTTTTGGTCATTTTGGTGTTGCAGTTGAAGATATTTACAAGAGAGTAGATCTAATAAAGGCAAAAGGAGGAAAGGTTACAAGGGAACCAGGGCCTGTTAAAGATGGCAGTACAGTAATTGCATTCATTGAAGATCCTGATGGTTATAAGTTTGAACTTTTGGAGAGAAGACCTACTTCTGAACCCCTGTGCCAAGTGATGCTTCGAGTAGGTGATCTTGATCGTGCCATAGCCTTCTATCAGAAAGCTGTTGGTATGAAACTTCTCCGCACAAGGGACAACCCTGAGGACAAGTACACAGTGGCCTTTATGGGCTATGGTCCTGAAGATAAGAATACTGTTCTAGAACTGACATATAACTATGGCGTCACTAATTATGACAAAGGAAATGGTTATGCTCAGATTGCAATAGGCACAAATGATGTCTATAAGACTGCAGAAGCAATCAAATTATGTGGAGGGAAGATTATCCGTGAACCTGGGCCATTGCCAGGCATCAACACCAAGATCGTAGTATGCTTGGACCCTGATGGTTGGAAATTGGCATTTGTTGATAATGTTGATTTTCTGAAGGAATTAGAGTGA 1041 0.4025 MASSLMLSATSMLRPCTTSSSSSCTSRRLALFHLVTTGGIALPQSKLFGAKGSEYLRVAEATAAEKLAQPEKNLFDWVKNDNRRFLHVVYRVGDLEKTIKFYTECLGMKLLRKRDIPEDRYSNAFLGYGPEESNFTVELTYNYGVDNYDIGTGFGHFGVAVEDIYKRVDLIKAKGGKVTREPGPVKDGSTVIAFIEDPDGYKFELLERRPTSEPLCQVMLRVGDLDRAIAFYQKAVGMKLLRTRDNPEDKYTVAFMGYGPEDKNTVLELTYNYGVTNYDKGNGYAQIAIGTNDVYKTAEAIKLCGGKIIREPGPLPGINTKIVVCLDPDGWKLAFVDNVDFLKELE 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3289 346 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 214 338 IPR037523 -
Ssu1g3289 346 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 215 338 IPR029068 -
Ssu1g3289 346 PANTHER LACTOYLGLUTATHIONE LYASE 19 346 - -
Ssu1g3289 346 PANTHER LACTOYLGLUTATHIONE LYASE CHLOROPLASTIC-RELATED 19 346 - -
Ssu1g3289 346 ProSitePatterns Glyoxalase I signature 2. 151 163 IPR018146 GO:0004462|GO:0046872
Ssu1g3289 346 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 84 208 IPR037523 -
Ssu1g3289 346 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 83 210 IPR029068 -
Ssu1g3289 346 CDD GlxI_Ni 86 206 - -
Ssu1g3289 346 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 85 205 IPR004360 -
Ssu1g3289 346 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 217 335 IPR004360 -
Ssu1g3289 346 TIGRFAM glyox_I: lactoylglutathione lyase 215 339 IPR004361 GO:0004462|GO:0046872
Ssu1g3289 346 TIGRFAM glyox_I: lactoylglutathione lyase 72 217 IPR004361 GO:0004462|GO:0046872
Ssu1g3289 346 Gene3D - 56 210 IPR029068 -
Ssu1g3289 346 ProSitePatterns Glyoxalase I signature 1. 87 108 IPR018146 GO:0004462|GO:0046872
Ssu1g3289 346 Gene3D - 211 346 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3289 Ssu-Chr1 85474194 85477016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3289 215 337 Calmodulin-binding Proteins AT1G08110 26.351 2.23e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3289 K01759 - gmx:100810908 649.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3289 1 85474194 85477016 Ssu1g3289 1 85474194 85477016 ECH