Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3288 ATGGCCAAAATTGCTCTTGGAACCACCCGGGAGGCCACTCAGCCAGACTGCATACAGGCCCTCGTCGTTGAATTCATAGCCACTTTCCTCTTTGTCTTTGTTGGCGTTGGTTCTTCCATGGCCGTTGACAAGCTAGGTGGGGATGCACTAGTGGGCTTATTTGCGGTGGCCGTGGCACATGCACTTGTGGTGGCTGTAATGATCTCCGCCGCCCACATTTCCGGTGGCCACCTCAACCCCTCCGTCACCCTTGGCCTCCTAGTCGGTGGTCACATCACAGTCTTTCGTTCAATCCTTTATTGGATTGATCAATTAGTAGCATCTGCAGCAGCTTCTTATCTGCTTTACTACCTCTCAGGAGGACAGGCAACTCCAGTTCATACGCTGGCTAGGGGTGTAGGGTATGGTCAAGGAGTAATTTGGGAGATTGTGTTGACGTTTTCTTTGTTGTTCACTGTGTATGCGACCATGGTGGATCCGAAAAAGGGAGCACTTGCTGGGCTTGGGCCAACGCTAGTTGGGTTTGTAGTGGGGGCCAACATCCTTGCTGGTGGGGCATTCTCCGCTGCTTCTATGAACCCAGCAAGATCTTTTGGGCCTGCCTTGGTAACTGGCAACTGGACCGATCATTGGGTTTACTGGGTTGGGCCTCTCATTGGTGGTGGCCTGGCCGGTTTCATCTACGAGACTTTCTTCATTGACCGATACCACGTTCCACTTCCTCGAGATGAAGAAAGCTAA 741 0.5209 MAKIALGTTREATQPDCIQALVVEFIATFLFVFVGVGSSMAVDKLGGDALVGLFAVAVAHALVVAVMISAAHISGGHLNPSVTLGLLVGGHITVFRSILYWIDQLVASAAASYLLYYLSGGQATPVHTLARGVGYGQGVIWEIVLTFSLLFTVYATMVDPKKGALAGLGPTLVGFVVGANILAGGAFSAASMNPARSFGPALVTGNWTDHWVYWVGPLIGGGLAGFIYETFFIDRYHVPLPRDEES 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3288 246 SUPERFAMILY Aquaporin-like 11 242 IPR023271 -
Ssu1g3288 246 CDD MIP 19 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g3288 246 PRINTS Major intrinsic protein family signature 96 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g3288 246 PRINTS Major intrinsic protein family signature 59 83 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g3288 246 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g3288 246 PRINTS Major intrinsic protein family signature 141 159 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g3288 246 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g3288 246 PRINTS Major intrinsic protein family signature 211 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g3288 246 Pfam Major intrinsic protein 13 228 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu1g3288 246 ProSitePatterns MIP family signature. 77 85 IPR022357 -
Ssu1g3288 246 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Ssu1g3288 246 PANTHER AQUAPORIN TIP4-1 2 245 - -
Ssu1g3288 246 PANTHER AQUAPORIN-8 2 245 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3288 Ssu-Chr1 85436546 85437766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3288 1 245 Major Intrinsic Protein MIP AT2G25810 78.367 3.56e-130 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3288 K09873 - gmx:100793258 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3288 1 85436546 85437766 Ssu1g3288 1 85436546 85437766 ECH