Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3285 ATGTGTAATACTACCCTCAACCCCTTTAAGAACCGTTTACAAATGTTCATGATGGTTCTTTCTCTCCCCTTCAATGTTCAAGCCCAAACCAAGGGTAGTGAGAAACAGAacctgccacaactaccacaaaCTGTTCATCCAAGCAAGGGGATTGTAATAGCAGTGCTCTCCATAATGTTTGCCGTAACATTTCTCTTGCTTTTCTATGTGAAGTTCTGTCGAGTCAGCCCTCACCAACCTCTGAGCCGAAACTCAAATCGCCAAAACTTTCCCGGCCTAACTCGATCAAGGTCTAGAGTTTGTGGGATTGAGAAACAAGTGGTTGAAACCCTCCCTTTCTTCAAGTTTTCTTCCCTCAAGGGATCCAAAGAAGGCCTAGAATGCACCGTTTGTCTCTCCAAATTCGAGGACACAGAGATTCTAAGACTTCTTCCAAAGTGCAAGCACGCTTTCCACATGAATTGTATTGACAAGTGGTTTGAAAGCCACTCTACATGCCCTCTATGCCGACGCAGGGTCGAAGCAGGGGACATCAAGAACCTAAACTATTCCTTAAGCTCAAGGTTCCTTCGAGTTCCTTCAAATCTAACGGAGGACCCAGACCTTGAAATCTTCGTTCAGAGAGAGCCATCTCATCGAGGGTCATCGAGAAGTGGCTTTTGGGACGTGGGCAAGTGCAAGAAACAAGAACTGCTTATCGACCAAGGCGATAGCACTACAAAGTGGAACAAACCTGTGCACCTGATAAATCACAAAATAGTTATCTCTAATGTTTTTACGAGGAGCAGGTGGAGTGATCTTAATTCTTCGGACCTGTTGTCCTTGAACAGTGAGATGATGCTTAACGATGTGTGCAGCAGGAGATTCTGTCCTTTGGAATCCACCGACAGTGGAAAGCGTCACGGGACTTCGAGCTTTGCCTCTACTTCTAACGAGGAAGAGAACTCGTTTACGGCACTGAATCCTGCTGAGAAGAGGTCCATGTCTGAGATTGCCAATGTTCCGAGGTTTGCACAAATCGGCAAGGGGAATAGGATCAGAGAATGTGTGACATCTAGTGGGCACAATGAGAGGTTGTGGAGGGTTTGGTGGCCAATTGCGCGAAGAACGGTCCAATGGTTTGCAAAACAAGAAAGGAATTCTGTTGAATTAGAACACACAAGTTTAGCTTCTAACGTTTGA 1182 0.4475 MCNTTLNPFKNRLQMFMMVLSLPFNVQAQTKGSEKQNLPQLPQTVHPSKGIVIAVLSIMFAVTFLLLFYVKFCRVSPHQPLSRNSNRQNFPGLTRSRSRVCGIEKQVVETLPFFKFSSLKGSKEGLECTVCLSKFEDTEILRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNYSLSSRFLRVPSNLTEDPDLEIFVQREPSHRGSSRSGFWDVGKCKKQELLIDQGDSTTKWNKPVHLINHKIVISNVFTRSRWSDLNSSDLLSLNSEMMLNDVCSRRFCPLESTDSGKRHGTSSFASTSNEEENSFTALNPAEKRSMSEIANVPRFAQIGKGNRIRECVTSSGHNERLWRVWWPIARRTVQWFAKQERNSVELEHTSLASNV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3285 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 178 IPR013083 -
Ssu1g3285 393 MobiDBLite consensus disorder prediction 294 324 - -
Ssu1g3285 393 CDD RING-H2_EL5_like 127 170 - -
Ssu1g3285 393 PANTHER RING-H2 FINGER PROTEIN ATL4J 20 387 - -
Ssu1g3285 393 MobiDBLite consensus disorder prediction 297 323 - -
Ssu1g3285 393 Pfam Ring finger domain 127 170 IPR001841 -
Ssu1g3285 393 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Ssu1g3285 393 SUPERFAMILY RING/U-box 108 174 - -
Ssu1g3285 393 SMART ring_2 128 169 IPR001841 -
Ssu1g3285 393 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 387 - -
Ssu1g3285 393 Coils Coil 390 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3285 Ssu-Chr1 85397181 85398362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3285 37 380 C3H Transcription Factor Family AT2G20030 40.782 9.93e-78 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3285 K10664 - gmx:100816668 587.415