Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3278 ATGAGAGTTTCAGCCGAGAAGCCAGAGACAGAGTGCGGCGCAAACTCGCACCCCGAGACCAAGAAGATAAAACGCATTCGCGACTCGAGCAAGCACCCGGTGTACCGCGGCGTGCGGATGCGGAACTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGCAAGAAATCGCGGATATGGCTGGGCACATTCCCCACGCCGGAAATGGCGGCCAGGGCGCACGACGTCGCCGCTCTCAGCATCAAAGGCTCCGCCGCCATTCTCAACTTCCCCCACCTGGCCAACTCACTCCCTCGCCCGGCTTCGCTCGCGCCGCGCGACGTCCAAGCCGCGGCGGCCAAAGCGGCGCACATGGACCCCTCTTCCCTCTCCTCCTTGGTCTCCGCAATGGACTTGTCCTCTGCCTCCGATGAATTGAGTCAGATAATAGAGCTTCCCTCCTTGGAAAGCACCGATGATGGCTCTCGCCAGTTGGAAAAAGAGTTCGTCTTCGTCGATTCCCTCGATGCTTGGATGTATCAGCCACCCTTCGCTTTTGACACGGAACAAGACATTGGTTTCGAGGGTTTGATGTGGAATTACTAG 585 0.5897 MRVSAEKPETECGANSHPETKKIKRIRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPHLANSLPRPASLAPRDVQAAAAKAAHMDPSSLSSLVSAMDLSSASDELSQIIELPSLESTDDGSRQLEKEFVFVDSLDAWMYQPPFAFDTEQDIGFEGLMWNY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3278 194 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Ssu1g3278 194 MobiDBLite consensus disorder prediction 1 30 - -
Ssu1g3278 194 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Ssu1g3278 194 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Ssu1g3278 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 15 181 - -
Ssu1g3278 194 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Ssu1g3278 194 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Ssu1g3278 194 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Ssu1g3278 194 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Ssu1g3278 194 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Ssu1g3278 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3278 Ssu-Chr1 85305388 85305972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3278 21 193 AP2-EREBP Transcription Factor Family AT5G11590 62.814 1.72e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Ssu1g3278 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3278 K09286 - gmx:100794316 342.813
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3278 1 85305388 85305972 Ssu1g3278 1 85305388 85305972 ECH