Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3270 ATGGAAGCCATGGAAGCACAAGAGTTTTTCCAGAGCACCTTCTGCCCCCAATTCCCCTCCGACAACATGGCACCCTCCAACACCAACGCCTCCGCCGCCGACCACTTCATCGTCGAGGACTTCTTCGACTTCTCCAACGACGACGACGACGCCGCCGTTACCGACGCCACCTTCGACTCTGTCCCCACCGACGACTCCCCCACCGTAACCCCCGTCGACGGCACCAACAAGTCGAATTTCCCGGCCGCCGACGGCCATTTCTCCGGTGACCTCTCCGTCCCGCAGTACGATGATCTTGCGGAATTGGAGTGGCTGTCCAAATTCGCGGAGGAATCGTTTTCGAGCGAGGATATGCAGAAGCTGCAGCTGATATCGGGTGTGAGGGTGCAAAACGACGCCGCGTCATCGCAAACGCGTGACCCGAACCCGGTGTTCAACCCGCAAGTGTCGGTTCCGGGCAAGGCCCGGAGCAAGCGCTCTCGTGGGCCCCCATGCAACTGGACCTCTCGCCTCGTTGTGCTCTCCCCGACCACCACGACGTCGTCTCCTCATTCCGACGCCGTGAAGAAGGCCCCGCCGGAGAGGAGGGACGTCGCCGACGGCGGCGAGGGGCGGAGGTGCCTGCATTGCGCCACGGACAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCGAAGACGCTCTGCAATGCGTGCGGCGTGAGGTACAAATCAGGCCGGCTGGTGCCCGAGTACAGGCCCGCCGCGAGCCCGACGTTCGTGCTGACCAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGCTCCGGCGCCAGAAGGAAATGGTGAGGGTCCAGCAACAGCAGTTGCTCCAACTGCAGCATCAGCAGAACATGATGTTTGATGTCTCATCCAACGGTGACGATTACTTGATCCATCAGCACGTGGACCCTGACTTCGCGCACCTGATCTAG 951 0.6215 MEAMEAQEFFQSTFCPQFPSDNMAPSNTNASAADHFIVEDFFDFSNDDDDAAVTDATFDSVPTDDSPTVTPVDGTNKSNFPAADGHFSGDLSVPQYDDLAELEWLSKFAEESFSSEDMQKLQLISGVRVQNDAASSQTRDPNPVFNPQVSVPGKARSKRSRGPPCNWTSRLVVLSPTTTTSSPHSDAVKKAPPERRDVADGGEGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQQQLLQLQHQQNMMFDVSSNGDDYLIHQHVDPDFAHLI 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3270 316 CDD ZnF_GATA 206 253 IPR000679 GO:0006355|GO:0043565
Ssu1g3270 316 MobiDBLite consensus disorder prediction 188 203 - -
Ssu1g3270 316 PIRSF Txn_fac_GATA_plant 1 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ssu1g3270 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 265 - -
Ssu1g3270 316 Gene3D - 201 251 IPR013088 GO:0006355|GO:0008270
Ssu1g3270 316 PANTHER GATA TRANSCRIPTION FACTOR 4 316 - -
Ssu1g3270 316 Coils Coil 268 288 - -
Ssu1g3270 316 MobiDBLite consensus disorder prediction 170 186 - -
Ssu1g3270 316 SMART GATA_3 201 251 IPR000679 GO:0006355|GO:0043565
Ssu1g3270 316 MobiDBLite consensus disorder prediction 133 203 - -
Ssu1g3270 316 PANTHER GATA TRANSCRIPTION FACTOR 4 316 - -
Ssu1g3270 316 ProSiteProfiles GATA-type zinc finger domain profile. 201 237 IPR000679 GO:0006355|GO:0043565
Ssu1g3270 316 Pfam GATA zinc finger 207 240 IPR000679 GO:0006355|GO:0043565
Ssu1g3270 316 ProSitePatterns GATA-type zinc finger domain. 207 232 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3270 Ssu-Chr1 85107619 85108867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3270 30 316 C2C2-Gata Transcription Factor Family AT4G32890 50.327 1.66e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu1g3270 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3270 - - gmx:100776588 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3270 1 85107619 85108867 Ssu1g3270 1 85107619 85108867 ECH