Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3269 ATGATGGCAGTGAGTTCGGCCTGCAAAGATGGGAGCAAGGTGGTAATGGACAACGGGAAATACGTGCGGTACACGCCTGAACAGGTGGAAGCACTGGAGAGGCTCTACCATGAATGCCCCAAACCAAGTTCCATTCGCCGCCAACAACTCATCAGAGAGTGTCCCATTCTCTCCAACATCGAGCCCAAACAGATCAAGGTTTGGTTCCAGAACCGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGCTGTGAACAGGAAGCTAACAGCAATGAATAAATTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTGTATGAAAACAGCTTTTTCCGCCAACAGACACAGAACGCGACCCTTGCGACGACGGACACGAGCTGTGAGTCGGTGGTAACGAGCGGTCAGCGGCACTTGACACCCCAGCATCCACCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCAGGAGTGGCCGCACGTGCCTGCGGTCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTAAATGTGATGTCCACTGGAAATGGTGGAACCATTGAGCTGCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCACCTGGCCGTGACTTCTGGTTGCTGCGCTACACATCTCTTTTGGAGGACGGTAGTCTTGTGGTCTGTGAAAGATCACTCAACAACACTCAGAATGGTCCTGCTATGCCCCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGCGGGTATCTGATAAGACCCTGCGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTCTTGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTACGAGTCATCAATGCTTCTAGCTCAGAGGACAACTATGGCTGCCTTACGTCATTTGAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTGACAGGATGGGGAAGAAGGCCTGCAGCTCTACGTGCACTGAGTCAGAGATTGAGCAAGGGTTTTAATGAAGCTGTCAACGGGTTTGCAGATGATGGTTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCCTCACCTAGCAAGATGATGGGAGTAAATCTTGGCTATAACAACAATGGGTTTCCCTCTGTGAGCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCGGCTGCTGCCATTAAAGCTGGTCCCTGTAGCTTGCCAGGGGCCCGACCAGGAGGTTTTGGGGGTCAGATTATTCTTCCACTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGACTGTACCTGGTGATGTTTTCCTCTTGCaaCTTTGCAGTGGAGTGGACGAGCATGCAGTTGGTACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTGGCACGGATGCTGCTAGTCCAAACCGTACTCTTGATCTGGCTTCTGCACTTGAGGTCGGAACCACAGCAAACAAAGCAGCTGGTGACAACTCAGGTCATTCTGGGAGCACAAAGTCTGTGATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAGGAGAGCATAGCAACTATGGCCCGACAATATGTTCGTAGTATCATAGCATCTGTTCAGAGGGTTTCATTAGCGCTTTCTCCTTCCCGTTTTGGCTCTCAAAATGCTTTTCACTTACCACCTGGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATAGGTTCTATCTAGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCTCAAATCCCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTGAAGGCATTACCCGTTTTTACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGACAACCTTGGTTGCACTTCAAGACATCACCCTGGAAAagatttttgatgaaaatggaaagaaaactCTGTGCTCTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATCTGTTTGTCTAGCATGGGGAGGCCAGTGTCCTATGAGAGAGCAGTTGCGTGGAAAGTATTAAACGAAGAAGAATCCGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2523 0.4792 MMAVSSACKDGSKVVMDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGVNLGYNNNGFPSVSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARPGGFGGQIILPLAHTIEHEEFMEVIKLENMGYYRDDMTVPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSGTDAASPNRTLDLASALEVGTTANKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQESIATMARQYVRSIIASVQRVSLALSPSRFGSQNAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDENGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3269 840 Coils Coil 75 116 - -
Ssu1g3269 840 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Ssu1g3269 840 Pfam MEKHLA domain 699 839 IPR013978 -
Ssu1g3269 840 SUPERFAMILY Bet v1-like 163 374 - -
Ssu1g3269 840 SMART HOX_1 17 83 IPR001356 GO:0003677
Ssu1g3269 840 Gene3D - 12 86 - -
Ssu1g3269 840 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Ssu1g3269 840 CDD homeodomain 20 80 IPR001356 GO:0003677
Ssu1g3269 840 CDD START_ArGLABRA2_like 158 373 - -
Ssu1g3269 840 Pfam START domain 164 372 IPR002913 GO:0008289
Ssu1g3269 840 SMART START_1 163 373 IPR002913 GO:0008289
Ssu1g3269 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 840 IPR044830 GO:0003700
Ssu1g3269 840 PANTHER CLASS III HD-ZIP PROTEIN CNA1 5 840 - -
Ssu1g3269 840 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Ssu1g3269 840 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Ssu1g3269 840 CDD bZIP 72 111 - -
Ssu1g3269 840 Gene3D - 198 379 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3269 Ssu-Chr1 85060560 85066352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3269 16 840 Homeobox Transcription Factor Family AT4G32880 80.797 0.0 1401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu1g3269 START 4.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3269 K09338 - gmx:100815727 1643.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3269 1 85060560 85066352 Ssu1g3269 1 85060560 85066352 ECH