Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3267 ATGGCCAAAGGATCTTCAACGTCTCCAAAGACAAAATCCATGACATTTATATGCCTCTTCATGTTCATGCTCAACTTCCAGTTATCCCATGGAGCGCAAGAGCTCGAGCTTGTGTTGTCCTTCAAAGCTTCCCTCAACGACCCGCTTCACTTTCTCTCCAACTGGGACACTTCCTCTGCCACCATCTGCAAGTGGCACGGCATCACCTGCGACAACAACGTTAACTCTTCCCACGTTAACGCTTTGGTGATCTCAGGAAAAAACATAACTGGCGAGCTTTCATCCTCCATTTTCCAACTTCCATACGTCACAAACCTCGACCTTTCCAACAATCAGCTTGTTGGGGAAATCACTTTTAACTACTCTCTTCATTCTCTGTCTCCACTCCGTTACCTTAACCTCAGCAACAACAACCTCACGGGTTCTTTGCCTCGGCCCTTGTTTTCTTTGTCCTTTTCTAACCTCGAAACTCTGGATCTCTCGAACAACATGTTTTCGGGGAACATACCTGATCAAATTGGATTTCTTTCCAGCCTAAGGTATCTTGATCTCGGAGGAAACGTTTTGGTGGGAAAGATTCCAGATTCCATCACCAACATGACCTCTTTAGAATACCTTACGTTGGCTTCAAACCAGTTAGTGGATAAGATACCAGAAGAAATAGGCCAAATGAAGAGCTTGAAGTGGATTTATTTGGGGTACAACAACCTTTCAGGTGAGATACCAAGTAGCATTGGAGAGTTACTCTCTTTGAATCACCTCGATCttgtttacaacaacctcacCGGGCCTATTCCTCAATCTCTCGGACACCTCACCGAGCTACAGTATCTCTTTCTCTACCAAAACAAACTAAGTGGTCCAATTCCCGTTTCCATTTTCGAACTGAAAAAGCTCATTTCACTCGATCTAAGTGACAACTCTCTTTCGGGTGAGATTTCTGAGCGTGTGGTTCAGCTCCAGGGACTTGAGATTCTCCACCTTTTCTCGAACAACTTCACTGGGAAGATTCCAAAGGCTGTTGCATCCTTGCCTCGGCTTCAGGTTCTTCAGCTATGGTCAAACGGATTAACAGGTGAGATTCCTGAAGAGCTAGGGAGGCATAGCAACCTCACTGTTTTGGACCTCTCCACCAACAACCTCGCGGGGAAGATCCCAGATAACATATGCGACTCTGGCAGTCTTTTCAAGCTCATCCTCTTCTCCAACTCTTTCGAAGGAGAAATCCCAAAGAGCTTAACCTCTTGCAGAAGCTTACGCCGTGTGAGACTCCAAAACAACGAGCTCTCGGGAAAACTACCATCGGAGTTGACCACACTGCCTCAGGTGTACTTCTTGGATATCTCTGGGAACCAGCTTTCTGGAAGGATCGATGACAGAAAATGGGACATGCCGTCGCTTCAAATGCTCAGTTTGGCTAACAACAACTTCTCAGGAGACATCCCAAACTCTTTCGGGACTTACAAACTGGAGGACTTGGACTTATCACACAACCAATTCTCAGGTTCTATTCCACTTGGTTTCAAAACCTTATCAGAGCTGGTAGAATTGAAGCTCAGCAATAACAAGCTCTTCGGTAACATCCCAGAAGAAATTTGCTCGTGCAGCGAGCTTGTGGCCTTAGACCTGAGTCACAACCAGCTCAGCGGTGAAATTCCGATGAAACTCTCCGACATGCCCGTTCTCGGCCTCCTCGACCTGTCGGAAAACCAATTCTCCGGCCAGATTCCGCAGAATTTGGGAAGCCTGGAGTCTCTCGTTCAGGTAAACATATCACACAACCATTTCCGTGGAAGCTTACCTTCCACCGGTGCTTTCCTTGCCATTAACGCGAGTGCAGTCACCGGCAACAACCTTTGTGACCGCGACGGTGACTCTTCAAGCGGTTTGCCACCGTGCAAAAATAACAACCAGAACCCAACTTGGCTCTTCATCATGCTGTGTTTTCTACTAGCGTTGGTTGCGTTCGCGGCGGCTTCTTTTCTCGTCTTTTGTGTTCGTAGGAGAAAGAACTTCTCGGAGGTACGAAGAGTGGAAAACGAAGACGGAACGTGGGAGCTGCAGTTTTTCGACTCCAAGGCCGCGAGGTTGATCAGCGTCGAGGATGTTTTGTCGGCGGTTAAAAAAGGACAGGTTGTGTCCAAAGGAAGGAACTGGGTTTCGTACGAAGGGAAGTGCATGGAGAATGAAATGCAGTTCGTGGTGAAGGAAATCAGCGACTTGAATTCTCTTCCTATGAGTATGTGGGAAGAGACGGTGAAGGTTGGGAAGCTTCGGCACCCGAATGTTTTTAAGCTTATTGGCACGTGTAGGTGTGGGAAGAGAGGGTACTTGGTGTACGAGTACGAGGAGGGGAAGAAGTTAAGTGAAATTGTGAACAGTTTGAGCTGGCAACGTCGGTGCAAAATTGCTGTTGGCGTTGCGAAAGCGCTTAAGTTCTTGCATTCTCACGCTTCATCGATGGTTTTGGTCGGAGAGGTGTCACCGGAGATAGTTTGGGTGGACGGTAAAGGCGTCCCTCGCCTTAAGGTCACCCCTCCCGTAATGCCATGTTTGGATGTCAAGGGTTTCATTTCTTCCCCCTACCTTGCCCAAGAGGCAAGAGAGAGGAAAGATGTGACGGAGAAGAGTGAGATATATGGGTTCGGAGTTATGCTGATAGAATTATTGACGGGAAGAAGCGCCATGGACATAGAAGCAGGCAATGGCATGCACAAGACCATTGTGGAGTGGGCCCGCTATTGCTACTCCGACTGTCATCTTGACACGTGGATAGATCCTGTGATGAAAGGTGGAGATGCATTGACCTATCAGAACGACATCGTTGAGACAATGAATCTCGCGCTGCACTGTACCGCCACTGATCCCACCGCAAGGCCATGCGCAAGAGACGTACTCAAAGCCCTAGAGATTGTTCACAGAACCACTTTTTGTTGA 2937 0.4753 MAKGSSTSPKTKSMTFICLFMFMLNFQLSHGAQELELVLSFKASLNDPLHFLSNWDTSSATICKWHGITCDNNVNSSHVNALVISGKNITGELSSSIFQLPYVTNLDLSNNQLVGEITFNYSLHSLSPLRYLNLSNNNLTGSLPRPLFSLSFSNLETLDLSNNMFSGNIPDQIGFLSSLRYLDLGGNVLVGKIPDSITNMTSLEYLTLASNQLVDKIPEEIGQMKSLKWIYLGYNNLSGEIPSSIGELLSLNHLDLVYNNLTGPIPQSLGHLTELQYLFLYQNKLSGPIPVSIFELKKLISLDLSDNSLSGEISERVVQLQGLEILHLFSNNFTGKIPKAVASLPRLQVLQLWSNGLTGEIPEELGRHSNLTVLDLSTNNLAGKIPDNICDSGSLFKLILFSNSFEGEIPKSLTSCRSLRRVRLQNNELSGKLPSELTTLPQVYFLDISGNQLSGRIDDRKWDMPSLQMLSLANNNFSGDIPNSFGTYKLEDLDLSHNQFSGSIPLGFKTLSELVELKLSNNKLFGNIPEEICSCSELVALDLSHNQLSGEIPMKLSDMPVLGLLDLSENQFSGQIPQNLGSLESLVQVNISHNHFRGSLPSTGAFLAINASAVTGNNLCDRDGDSSSGLPPCKNNNQNPTWLFIMLCFLLALVAFAAASFLVFCVRRRKNFSEVRRVENEDGTWELQFFDSKAARLISVEDVLSAVKKGQVVSKGRNWVSYEGKCMENEMQFVVKEISDLNSLPMSMWEETVKVGKLRHPNVFKLIGTCRCGKRGYLVYEYEEGKKLSEIVNSLSWQRRCKIAVGVAKALKFLHSHASSMVLVGEVSPEIVWVDGKGVPRLKVTPPVMPCLDVKGFISSPYLAQEARERKDVTEKSEIYGFGVMLIELLTGRSAMDIEAGNGMHKTIVEWARYCYSDCHLDTWIDPVMKGGDALTYQNDIVETMNLALHCTATDPTARPCARDVLKALEIVHRTTFC 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3267 978 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Ssu1g3267 978 Gene3D Ribonuclease Inhibitor 32 185 IPR032675 -
Ssu1g3267 978 SMART LRR_typ_2 464 487 IPR003591 -
Ssu1g3267 978 SMART LRR_typ_2 272 296 IPR003591 -
Ssu1g3267 978 SMART LRR_typ_2 152 176 IPR003591 -
Ssu1g3267 978 SMART LRR_typ_2 511 535 IPR003591 -
Ssu1g3267 978 SMART LRR_typ_2 369 392 IPR003591 -
Ssu1g3267 978 SMART LRR_typ_2 344 368 IPR003591 -
Ssu1g3267 978 SMART LRR_typ_2 200 224 IPR003591 -
Ssu1g3267 978 SMART LRR_typ_2 126 150 IPR003591 -
Ssu1g3267 978 SMART LRR_typ_2 559 583 IPR003591 -
Ssu1g3267 978 SUPERFAMILY L domain-like 337 601 - -
Ssu1g3267 978 SUPERFAMILY Protein kinase-like (PK-like) 697 971 IPR011009 -
Ssu1g3267 978 ProSiteProfiles Protein kinase domain profile. 661 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g3267 978 PANTHER - 8 976 - -
Ssu1g3267 978 Gene3D Ribonuclease Inhibitor 186 293 IPR032675 -
Ssu1g3267 978 Pfam Protein tyrosine and serine/threonine kinase 716 968 IPR001245 GO:0004672|GO:0006468
Ssu1g3267 978 Pfam Leucine Rich Repeat 129 147 IPR001611 GO:0005515
Ssu1g3267 978 Gene3D Transferase(Phosphotransferase) domain 1 782 976 - -
Ssu1g3267 978 ProSiteProfiles Leucine-rich repeat profile. 128 151 IPR001611 GO:0005515
Ssu1g3267 978 SUPERFAMILY RNI-like 74 382 - -
Ssu1g3267 978 Pfam Leucine rich repeat 489 548 IPR001611 GO:0005515
Ssu1g3267 978 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Ssu1g3267 978 Pfam Leucine rich repeat 226 285 IPR001611 GO:0005515
Ssu1g3267 978 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 8 976 - -
Ssu1g3267 978 Gene3D Ribonuclease Inhibitor 296 627 IPR032675 -
Ssu1g3267 978 Gene3D Phosphorylase Kinase; domain 1 671 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3267 Ssu-Chr1 85023207 85026523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3267 19 970 Receptor kinase-like Gene Family AT2G25790 53.430 0.0 938
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Ssu1g3267 PK_Tyr_Ser-Thr 1.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3267 - - gmx:100777118 1719.9